{
    "type": "genome",
    "identifier": "GCF_900177745.1",
    "organism": "Corynebacterium pollutisoli",
    "title": "Corynebacterium pollutisoli",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900177745.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06295981",
        "wgs_master": "FXAR00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1610489",
        "species_taxid": "1610489",
        "organism_name": "Corynebacterium pollutisoli",
        "infraspecific_name": "strain=VDS11",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/04/20",
        "asm_name": "IMG-taxon 2708742385 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900177745.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/177/745/GCF_900177745.1_IMG-taxon_2708742385_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2540854",
        "genome_size_ungapped": "2540562",
        "gc_percent": "68.500000",
        "replicon_count": "0",
        "scaffold_count": "15",
        "contig_count": "15",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900177745.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "2537",
        "protein_coding_gene_count": "2447",
        "non_coding_gene_count": "63",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-04-20",
    "dateModified": "2017-04-20",
    "datePublished": "2017-04-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Corynebacterium pollutisoli"
        ],
        "sample_taxid": [
            "1610489"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.689 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2540854",
        "Number of Sequences": "15",
        "Longest Sequences (bp)": "667646",
        "N50 (bp)": "275142",
        "Gap Ratio (%)": "0.011492",
        "GCcontent (%)": "68.5",
        "Number of CDSs": "2489",
        "Average Protein Length": "314.5",
        "Coding Ratio (%)": "92.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Corynebacterium pollutisoli",
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                "relation_to_type": "type",
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            },
            {
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                "taxid": 1223514,
                "species_taxid": 1223514,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Corynebacterium humireducens",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium marinum",
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                "species_taxid": 349751,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3634,
                "matched_fragments": 667,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium marinum",
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                "accession": "GCA_014645275.1",
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                "species_taxid": 349751,
                "relation_to_type": "type",
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                "ani": 84.3045,
                "matched_fragments": 670,
                "total_fragments": 838,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium halotolerans",
                "strain": "strain=YIM 70093 = DSM 44683",
                "accession": "GCA_000341345.1",
                "taxid": 225326,
                "species_taxid": 225326,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4407,
                "matched_fragments": 599,
                "total_fragments": 838,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium halotolerans",
                "strain": "strain=DSM 44683",
                "accession": "GCA_000688435.1",
                "taxid": 225326,
                "species_taxid": 225326,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3853,
                "matched_fragments": 599,
                "total_fragments": 838,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_900177745.1",
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                "matched_fragments": 835,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.83",
                "min_intra_species_ani": "98.83",
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            },
            {
                "accession": "GCF_000819445.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_012838985.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
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            },
            {
                "accession": "GCF_003955685.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_009734405.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
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            },
            {
                "accession": "GCF_001021045.1",
                "gtdb_species": "s__Corynebacterium testudinoris",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.275,
        "cell_length": 0.068,
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        "growth_tmp": 28.0,
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        "coding_genes": 2390.094,
        "rRNA16S_genes": 4.282,
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        "gram_stain": 1.0,
        "sporulation": 0.0,
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        "range_salinity": 0.75,
        "facultative_respiration": 0.231,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 0.985,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.014,
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    "_genome_taxon": [
        "Corynebacterium",
        "pollutisoli"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}