{
    "type": "genome",
    "identifier": "GCF_900182585.1",
    "organism": "Balnearium lithotrophicum",
    "title": "Balnearium lithotrophicum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900182585.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06269117",
        "wgs_master": "FXTM00000000.1",
        "refseq_category": "reference genome",
        "taxid": "223788",
        "species_taxid": "223788",
        "organism_name": "Balnearium lithotrophicum",
        "infraspecific_name": "strain=DSM 16304",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/07/11",
        "asm_name": "IMG-taxon 2724679708 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900182585.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/182/585/GCF_900182585.1_IMG-taxon_2724679708_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1727484",
        "genome_size_ungapped": "1727313",
        "gc_percent": "41.000000",
        "replicon_count": "0",
        "scaffold_count": "49",
        "contig_count": "49",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900182585.1-RS_2024_05_04",
        "annotation_date": "2024-05-04",
        "total_gene_count": "1927",
        "protein_coding_gene_count": "1855",
        "non_coding_gene_count": "47",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-07-11",
    "dateModified": "2019-07-11",
    "datePublished": "2019-07-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Balnearium lithotrophicum"
        ],
        "sample_taxid": [
            "223788"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.486 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1727484",
        "Number of Sequences": "49",
        "Longest Sequences (bp)": "138407",
        "N50 (bp)": "62027",
        "Gap Ratio (%)": "0.009899",
        "GCcontent (%)": "41.2",
        "Number of CDSs": "1820",
        "Average Protein Length": "299.1",
        "Coding Ratio (%)": "94.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Balnearium lithotrophicum",
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                "accession": "GCA_900182585.1",
                "taxid": 223788,
                "species_taxid": 223788,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9999,
                "matched_fragments": 550,
                "total_fragments": 554,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thermovibrio guaymasensis",
                "strain": "strain=DSM 15521",
                "accession": "GCA_003633715.1",
                "taxid": 240167,
                "species_taxid": 240167,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4386,
                "matched_fragments": 132,
                "total_fragments": 554,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phorcysia thermohydrogeniphila",
                "strain": "strain=DSM 24425",
                "accession": "GCA_004339575.1",
                "taxid": 936138,
                "species_taxid": 936138,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4086,
                "matched_fragments": 111,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermovibrio ammonificans",
                "strain": "strain=HB-1",
                "accession": "GCA_000185805.1",
                "taxid": 228745,
                "species_taxid": 228745,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2932,
                "matched_fragments": 74,
                "total_fragments": 554,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_900182585.1",
                "gtdb_species": "s__Balnearium lithotrophicum",
                "ani": 99.9999,
                "matched_fragments": 550,
                "total_fragments": 554,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Desulfurobacteriia;o__Desulfurobacteriales;f__Desulfurobacteriaceae;g__Balnearium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_003978105.1",
                "gtdb_species": "s__Balnearium sp003978105",
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                "matched_fragments": 238,
                "total_fragments": 554,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Desulfurobacteriia;o__Desulfurobacteriales;f__Desulfurobacteriaceae;g__Balnearium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015488335.1",
                "gtdb_species": "s__Balnearium sp015488335",
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                "matched_fragments": 174,
                "total_fragments": 554,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Desulfurobacteriia;o__Desulfurobacteriales;f__Desulfurobacteriaceae;g__Balnearium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015490195.1",
                "gtdb_species": "s__Balnearium sp015490195",
                "ani": 77.6838,
                "matched_fragments": 150,
                "total_fragments": 554,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Desulfurobacteriia;o__Desulfurobacteriales;f__Desulfurobacteriaceae;g__Balnearium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003633715.1",
                "gtdb_species": "s__Thermovibrio guaymasensis",
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                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Desulfurobacteriia;o__Desulfurobacteriales;f__Desulfurobacteriaceae;g__Thermovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004339575.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000185805.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Desulfurobacteriia;o__Desulfurobacteriales;f__Desulfurobacteriaceae;g__Thermovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003978805.1",
                "gtdb_species": "s__Phorcysia sp003978805",
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                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Desulfurobacteriia;o__Desulfurobacteriales;f__Desulfurobacteriaceae;g__Phorcysia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": 0.117,
        "growth_tmp": 72.7,
        "optimum_tmp": 70.0,
        "optimum_ph": null,
        "genome_size": 1727484.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Balnearium",
        "lithotrophicum"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}