{ "type": "genome", "identifier": "GCF_900182645.1", "organism": "Flavobacterium resistens", "title": "Flavobacterium resistens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900182645.1", "bioproject": "PRJNA224116", "biosample": "SAMN06265349", "wgs_master": "FXTA00000000.1", "refseq_category": "reference genome", "taxid": "443612", "species_taxid": "443612", "organism_name": "Flavobacterium resistens", "infraspecific_name": "strain=DSM 19382", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/12", "asm_name": "IMG-taxon 2724679687 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900182645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/182/645/GCF_900182645.1_IMG-taxon_2724679687_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5036896", "genome_size_ungapped": "5036896", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900182645.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4292", "protein_coding_gene_count": "4219", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-12", "dateModified": "2019-07-12", "datePublished": "2019-07-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium resistens" ], "sample_taxid": [ "443612" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Busan" ], "sample_host_location_id": [], "data_size": "1.392 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5036896", "Number of Sequences": "23", "Longest Sequences (bp)": "1411208", "N50 (bp)": "1239413", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.3", "Number of CDSs": "4211", "Average Protein Length": "348.7", "Coding Ratio (%)": "87.5", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium resistens", "strain": "strain=DSM 19382", "accession": 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"matched_fragments": 1058, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium crocinum", "strain": "strain=HYN0056", "accession": "GCA_003122385.1", "taxid": 2183896, "species_taxid": 2183896, "relation_to_type": "type", "validated": true, "ani": 83.4023, "matched_fragments": 1101, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 83.3356, "matched_fragments": 1084, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium chilense", "strain": "strain=LMG 26360", "accession": "GCA_001602525.1", "taxid": 946677, "species_taxid": 946677, "relation_to_type": "type", "validated": true, "ani": 83.1314, "matched_fragments": 1080, "total_fragments": 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