{
    "type": "genome",
    "identifier": "GCF_900182685.1",
    "organism": "Dietzia kunjamensis subsp. schimae",
    "title": "Dietzia kunjamensis subsp. schimae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900182685.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06265174",
        "wgs_master": "FXTG00000000.1",
        "refseq_category": "na",
        "taxid": "498198",
        "species_taxid": "322509",
        "organism_name": "Dietzia kunjamensis subsp. schimae",
        "infraspecific_name": "strain=DSM 45139",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/07/11",
        "asm_name": "IMG-taxon 2724679793 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900182685.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/182/685/GCF_900182685.1_IMG-taxon_2724679793_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3648026",
        "genome_size_ungapped": "3648026",
        "gc_percent": "70.500000",
        "replicon_count": "0",
        "scaffold_count": "20",
        "contig_count": "20",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900182685.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "3417",
        "protein_coding_gene_count": "3322",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-07-11",
    "dateModified": "2019-07-11",
    "datePublished": "2019-07-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Dietzia kunjamensis subsp. schimae"
        ],
        "sample_taxid": [
            "498198"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.984 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3648026",
        "Number of Sequences": "20",
        "Longest Sequences (bp)": "958455",
        "N50 (bp)": "357268",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "70.5",
        "Number of CDSs": "3389",
        "Average Protein Length": "328.0",
        "Coding Ratio (%)": "91.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Dietzia kunjamensis subsp. schimae",
                "strain": "strain=DSM 45139",
                "accession": "GCA_900182685.1",
                "taxid": 498198,
                "species_taxid": 322509,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1207,
                "total_fragments": 1207,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Dietzia kunjamensis subsp. schimae",
                "strain": "strain=YIM 65001T",
                "accession": "GCA_014144975.1",
                "taxid": 498198,
                "species_taxid": 322509,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.4476,
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                "total_fragments": 1207,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Dietzia kunjamensis",
                "strain": "strain=DSM 44907",
                "accession": "GCA_003610395.1",
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                "species_taxid": 322509,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.1737,
                "matched_fragments": 1082,
                "total_fragments": 1207,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Dietzia kunjamensis",
                "strain": "strain=K30-10T",
                "accession": "GCA_014144965.1",
                "taxid": 322509,
                "species_taxid": 322509,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.674,
                "matched_fragments": 703,
                "total_fragments": 1207,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Dietzia maris",
                "strain": "strain=IMV 195",
                "accession": "GCA_009806365.1",
                "taxid": 37915,
                "species_taxid": 37915,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 96.332,
                "matched_fragments": 674,
                "total_fragments": 1207,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Dietzia maris",
                "strain": "strain=IMV 195T",
                "accession": "GCA_014144855.1",
                "taxid": 37915,
                "species_taxid": 37915,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 96.2375,
                "matched_fragments": 651,
                "total_fragments": 1207,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Dietzia massiliensis",
                "strain": "strain=Marseille-Q0999",
                "accession": "GCA_018390595.1",
                "taxid": 2697499,
                "species_taxid": 2697499,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.4478,
                "matched_fragments": 916,
                "total_fragments": 1207,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dietzia cinnamea",
                "strain": "strain=NBRC 102147",
                "accession": "GCA_001571065.1",
                "taxid": 321318,
                "species_taxid": 321318,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.2872,
                "matched_fragments": 925,
                "total_fragments": 1207,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dietzia lutea",
                "strain": "strain=YIM 80766",
                "accession": "GCA_003096075.1",
                "taxid": 546160,
                "species_taxid": 546160,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.9259,
                "matched_fragments": 963,
                "total_fragments": 1207,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014144855.1",
                "gtdb_species": "s__Dietzia maris",
                "ani": 96.2102,
                "matched_fragments": 651,
                "total_fragments": 1207,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.49",
                "min_intra_species_ani": "96.42",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 16,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000186325.1",
                "gtdb_species": "s__Dietzia cinnamea_A",
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                "matched_fragments": 843,
                "total_fragments": 1207,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia",
                "ani_circumscription_radius": 95.1735,
                "mean_intra_species_ani": "96.59",
                "min_intra_species_ani": "96.10",
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                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001571065.1",
                "gtdb_species": "s__Dietzia cinnamea",
                "ani": 86.2744,
                "matched_fragments": 927,
                "total_fragments": 1207,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia",
                "ani_circumscription_radius": 95.1735,
                "mean_intra_species_ani": "97.27",
                "min_intra_species_ani": "96.55",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_008369165.1",
                "gtdb_species": "s__Dietzia sp008369165",
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                "matched_fragments": 899,
                "total_fragments": 1207,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003096075.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia",
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                "mean_intra_species_ani": "99.99",
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                "mean_intra_species_af": "1.00",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_014145145.1",
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                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_002415925.1",
                "gtdb_species": "s__Dietzia sp002415925",
                "ani": 84.1208,
                "matched_fragments": 746,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002289575.1",
                "gtdb_species": "s__Dietzia natronolimnaea_A",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia",
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                "mean_intra_species_ani": "96.66",
                "min_intra_species_ani": "96.66",
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                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.041,
        "doubling_h": null,
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        "optimum_ph": 7.333,
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        "coding_genes": 3361.166,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 48.333,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 1.0,
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    },
    "_genome_taxon": [
        "Dietzia",
        "kunjamensis",
        "subsp.",
        "schimae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}