{ "type": "genome", "identifier": "GCF_900182885.1", "organism": "Pseudomonas panipatensis", "title": "Pseudomonas panipatensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900182885.1", "bioproject": "PRJNA224116", "biosample": "SAMN06295951", "wgs_master": "FXUC00000000.1", "refseq_category": "na", "taxid": "428992", "species_taxid": "428992", "organism_name": "Pseudomonas panipatensis", "infraspecific_name": "strain=Esp-1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/04/08", "asm_name": "IMG-taxon 2706794920 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900182885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/182/885/GCF_900182885.1_IMG-taxon_2706794920_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5781178", "genome_size_ungapped": "5780777", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900182885.1-RS_2024_05_22", "annotation_date": "2024-05-22", "total_gene_count": "5426", "protein_coding_gene_count": "5297", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-04-08", "dateModified": "2023-04-08", "datePublished": "2023-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas panipatensis" ], "sample_taxid": [ "428992" ], 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"total_fragments": 1909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 82.6903, "matched_fragments": 975, "total_fragments": 1909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 82.56, "matched_fragments": 976, "total_fragments": 1909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aromaticivorans", "strain": "strain=MAP12", "accession": "GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 82.144, "matched_fragments": 777, "total_fragments": 1909, "ani_threshold": 95, "status": 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1909, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008807415.1", "gtdb_species": "s__Pseudomonas sp002079985", "ani": 85.3211, "matched_fragments": 1337, "total_fragments": 1909, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.48", "min_intra_species_ani": "95.53", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 9, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.041, "cell_length": 0.498, "doubling_h": -0.025, "growth_tmp": 28.0, "optimum_tmp": 27.972, "optimum_ph": 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