{
    "type": "genome",
    "identifier": "GCF_900183975.1",
    "organism": "Xanthomonas fragariae",
    "title": "Xanthomonas fragariae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "JLU",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900183975.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA104068692",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "48664",
        "species_taxid": "48664",
        "organism_name": "Xanthomonas fragariae",
        "infraspecific_name": "strain=PD885",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/05/25",
        "asm_name": "PD885.1",
        "asm_submitter": "JLU",
        "gbrs_paired_asm": "GCA_900183975.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/183/975/GCF_900183975.1_PD885.1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4328441",
        "genome_size_ungapped": "4328441",
        "gc_percent": "62.000000",
        "replicon_count": "3",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900183975.1-RS_2024_05_05",
        "annotation_date": "2024-05-05",
        "total_gene_count": "4093",
        "protein_coding_gene_count": "3298",
        "non_coding_gene_count": "144",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-05-25",
    "dateModified": "2017-05-25",
    "datePublished": "2017-05-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Xanthomonas fragariae"
        ],
        "sample_taxid": [
            "48664"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.187 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4328441",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "4272102",
        "N50 (bp)": "4272102",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.2",
        "Number of CDSs": "4024",
        "Average Protein Length": "301.2",
        "Coding Ratio (%)": "84.0",
        "Number of rRNAs": "6",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Xanthomonas fragariae",
                "strain": "strain=PD885",
                "accession": "GCA_900183975.1",
                "taxid": 48664,
                "species_taxid": 48664,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1440,
                "total_fragments": 1442,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Xanthomonas fragariae",
                "strain": "strain=PD 885",
                "accession": "GCA_900380235.1",
                "taxid": 48664,
                "species_taxid": 48664,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.7893,
                "matched_fragments": 1166,
                "total_fragments": 1442,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Xanthomonas hortorum",
                "strain": "strain=WHRI 7744",
                "accession": "GCA_003064105.1",
                "taxid": 56454,
                "species_taxid": 56454,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 87.2014,
                "matched_fragments": 1037,
                "total_fragments": 1442,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas hydrangeae",
                "strain": "strain=LMG 31884",
                "accession": "GCA_905142475.1",
                "taxid": 2775159,
                "species_taxid": 2775159,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.0986,
                "matched_fragments": 1086,
                "total_fragments": 1442,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas hortorum",
                "strain": "strain=CFBP 2533",
                "accession": "GCA_021353095.1",
                "taxid": 56454,
                "species_taxid": 56454,
                "relation_to_type": "pathovar",
                "validated": true,
                "ani": 86.987,
                "matched_fragments": 1050,
                "total_fragments": 1442,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas hortorum",
                "strain": "strain=CFBP2533",
                "accession": "GCA_012922215.1",
                "taxid": 56454,
                "species_taxid": 56454,
                "relation_to_type": "pathovar",
                "validated": true,
                "ani": 86.9484,
                "matched_fragments": 1068,
                "total_fragments": 1442,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas arboricola",
                "strain": "strain=CFBP 2528",
                "accession": "GCA_001013475.1",
                "taxid": 56448,
                "species_taxid": 56448,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.8572,
                "matched_fragments": 1060,
                "total_fragments": 1442,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas euroxanthea",
                "strain": "strain=CPBF 424",
                "accession": "GCA_900476395.1",
                "taxid": 2259622,
                "species_taxid": 2259622,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.6455,
                "matched_fragments": 1069,
                "total_fragments": 1442,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas nasturtii",
                "strain": "strain=WHRI 8853",
                "accession": "GCA_001660815.1",
                "taxid": 1843581,
                "species_taxid": 1843581,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.3507,
                "matched_fragments": 1047,
                "total_fragments": 1442,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas vasicola",
                "strain": "strain=CFBP2543",
                "accession": "GCA_002939925.1",
                "taxid": 56459,
                "species_taxid": 56459,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6649,
                "matched_fragments": 1013,
                "total_fragments": 1442,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas bromi",
                "strain": "strain=CFBP1976",
                "accession": "GCA_002939755.1",
                "taxid": 56449,
                "species_taxid": 56449,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6396,
                "matched_fragments": 1019,
                "total_fragments": 1442,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas oryzae",
                "strain": "strain=WHRI 5234",
                "accession": "GCA_003064145.1",
                "taxid": 347,
                "species_taxid": 347,
                "relation_to_type": "pathovar",
                "validated": true,
                "ani": 85.6148,
                "matched_fragments": 992,
                "total_fragments": 1442,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas bromi",
                "strain": "",
                "accession": "GCA_900092025.1",
                "taxid": 56449,
                "species_taxid": 56449,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.5765,
                "matched_fragments": 1036,
                "total_fragments": 1442,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900183975.1",
                "gtdb_species": "s__Xanthomonas fragariae",
                "ani": 100.0,
                "matched_fragments": 1440,
                "total_fragments": 1442,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xanthomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.74",
                "min_intra_species_ani": "99.53",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 62,
                "status": "conclusive"
            },
            {
                "accession": "GCF_017603965.1",
                "gtdb_species": "s__Xanthomonas fragariae_A",
                "ani": 94.8206,
                "matched_fragments": 1142,
                "total_fragments": 1442,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xanthomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003064105.1",
                "gtdb_species": "s__Xanthomonas hortorum",
                "ani": 87.1789,
                "matched_fragments": 1040,
                "total_fragments": 1442,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xanthomonas",
                "ani_circumscription_radius": 96.0883,
                "mean_intra_species_ani": "96.84",
                "min_intra_species_ani": "96.16",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_002939985.1",
                "gtdb_species": "s__Xanthomonas hortorum_A",
                "ani": 86.9404,
                "matched_fragments": 1067,
                "total_fragments": 1442,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xanthomonas",
                "ani_circumscription_radius": 96.0883,
                "mean_intra_species_ani": "98.80",
                "min_intra_species_ani": "97.51",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 28,
                "status": "-"
            },
            {
                "accession": "GCF_002939945.1",
                "gtdb_species": "s__Xanthomonas arboricola_A",
                "ani": 86.9211,
                "matched_fragments": 1032,
                "total_fragments": 1442,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xanthomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.91",
                "min_intra_species_ani": "95.91",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_905142465.1",
                "gtdb_species": "s__Xanthomonas sp905142465",
                "ani": 86.9143,
                "matched_fragments": 1079,
                "total_fragments": 1442,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xanthomonas",
                "ani_circumscription_radius": 95.1927,
                "mean_intra_species_ani": "99.49",
                "min_intra_species_ani": "99.23",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001423495.1",
                "gtdb_species": "s__Xanthomonas sp001423495",
                "ani": 86.8884,
                "matched_fragments": 1020,
                "total_fragments": 1442,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xanthomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001013475.1",
                "gtdb_species": "s__Xanthomonas arboricola",
                "ani": 86.8635,
                "matched_fragments": 1061,
                "total_fragments": 1442,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xanthomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.94",
                "min_intra_species_ani": "96.17",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 117,
                "status": "-"
            },
            {
                "accession": "GCF_900476395.1",
                "gtdb_species": "s__Xanthomonas euroxanthea",
                "ani": 86.6342,
                "matched_fragments": 1070,
                "total_fragments": 1442,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xanthomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
                "min_intra_species_ani": "97.74",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 25,
                "status": "-"
            },
            {
                "accession": "GCF_014197275.1",
                "gtdb_species": "s__Xanthomonas campestris_B",
                "ani": 86.4631,
                "matched_fragments": 1010,
                "total_fragments": 1442,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xanthomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.71",
                "min_intra_species_ani": "98.71",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001660815.1",
                "gtdb_species": "s__Xanthomonas nasturtii",
                "ani": 86.3574,
                "matched_fragments": 1045,
                "total_fragments": 1442,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xanthomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.97",
                "min_intra_species_ani": "98.97",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000772705.2",
                "gtdb_species": "s__Xanthomonas vasicola",
                "ani": 85.6747,
                "matched_fragments": 1013,
                "total_fragments": 1442,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xanthomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.75",
                "min_intra_species_ani": "98.20",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 113,
                "status": "-"
            },
            {
                "accession": "GCF_900092025.1",
                "gtdb_species": "s__Xanthomonas bromi",
                "ani": 85.6104,
                "matched_fragments": 1031,
                "total_fragments": 1442,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xanthomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": 0.605,
        "growth_tmp": 28.0,
        "optimum_tmp": 27.699,
        "optimum_ph": null,
        "genome_size": 4273011.857,
        "gc_content": 62.262,
        "coding_genes": 3287.714,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 52.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Xanthomonas",
        "fragariae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}