{ "type": "genome", "identifier": "GCF_900184245.1", "organism": "Brachybacterium massiliense", "title": "Brachybacterium massiliense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900184245.1", "bioproject": "PRJNA224116", "biosample": "SAMEA104087843", "wgs_master": "FXXB00000000.1", "refseq_category": "reference genome", "taxid": "1755098", "species_taxid": "1755098", "organism_name": "Brachybacterium massiliense", "infraspecific_name": "strain=mt5", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/05/23", "asm_name": "PRJEB13137", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_900184245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/184/245/GCF_900184245.1_PRJEB13137", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3865488", "genome_size_ungapped": "3865488", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900184245.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3604", "protein_coding_gene_count": "3482", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-05-23", "dateModified": "2017-05-23", "datePublished": "2017-05-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Brachybacterium massiliense" ], "sample_taxid": [ "1755098" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.030 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3865488", "Number of Sequences": "8", "Longest Sequences (bp)": "1753882", "N50 (bp)": "708875", "Gap Ratio (%)": "0.000181", "GCcontent (%)": "70.6", "Number of CDSs": "3613", "Average Protein Length": "323.0", "Coding Ratio (%)": "90.6", "Number of rRNAs": "15", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brachybacterium massiliense", "strain": "strain=mt5", "accession": "GCA_900184245.1", "taxid": 1755098, "species_taxid": 1755098, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1275, "total_fragments": 1284, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Brachybacterium faecium", "strain": "strain=DSM 4810", "accession": "GCA_000023405.1", "taxid": 43669, "species_taxid": 43669, "relation_to_type": "type", "validated": true, "ani": 85.5159, "matched_fragments": 878, "total_fragments": 1284, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium vulturis", "strain": "strain=VM2412", "accession": "GCA_002407185.1", "taxid": 2017484, "species_taxid": 2017484, "relation_to_type": "type", "validated": true, "ani": 84.9619, "matched_fragments": 839, "total_fragments": 1284, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium ginsengisoli", "strain": "strain=DCY80", "accession": "GCA_002407065.1", "taxid": 1331682, "species_taxid": 1331682, "relation_to_type": "type", "validated": true, "ani": 84.8307, "matched_fragments": 890, "total_fragments": 1284, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium saurashtrense", "strain": "strain=DSM 23186", "accession": "GCA_003355475.1", "taxid": 556288, "species_taxid": 556288, "relation_to_type": "type", "validated": true, "ani": 84.8275, "matched_fragments": 873, "total_fragments": 1284, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium avium", "strain": "strain=VR2415", "accession": "GCA_002216795.1", "taxid": 2017485, "species_taxid": 2017485, "relation_to_type": "type", "validated": true, "ani": 84.8098, "matched_fragments": 842, "total_fragments": 1284, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium saurashtrense", "strain": "strain=DSM 23186", "accession": "GCA_003994295.1", "taxid": 556288, "species_taxid": 556288, "relation_to_type": "type", "validated": true, "ani": 84.7467, "matched_fragments": 883, "total_fragments": 1284, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium aquaticum", "strain": "strain=DSM 28796", "accession": "GCA_014204755.1", "taxid": 1432564, "species_taxid": 1432564, "relation_to_type": "type", "validated": true, "ani": 84.633, "matched_fragments": 802, "total_fragments": 1284, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium epidermidis", "strain": "strain=Marseille-Q2903", "accession": "GCA_015209585.1", "taxid": 2781983, "species_taxid": 2781983, "relation_to_type": "type", "validated": true, "ani": 81.9962, "matched_fragments": 662, "total_fragments": 1284, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium halotolerans subsp. kimchii", "strain": "strain=CBA3105", "accession": "GCA_020792675.1", "taxid": 2887346, "species_taxid": 2795215, "relation_to_type": "type", "validated": true, "ani": 80.7603, "matched_fragments": 676, "total_fragments": 1284, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium kimchii", "strain": "strain=CBA3104", 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