{ "type": "genome", "identifier": "GCF_900184895.1", "organism": "Flavimaricola marinus", "title": "Flavimaricola marinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UVEG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900184895.1", "bioproject": "PRJNA224116", "biosample": "SAMEA104102533", "wgs_master": "FXZK00000000.1", "refseq_category": "reference genome", "taxid": "1819565", "species_taxid": "1819565", "organism_name": "Flavimaricola marinus", "infraspecific_name": "strain=CECT 8899", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/07/23", "asm_name": "L.marina_CECT8899_Spades_Prokka", "asm_submitter": "UVEG", "gbrs_paired_asm": "GCA_900184895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/184/895/GCF_900184895.1_L.marina_CECT8899_Spades_Prokka", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4792571", "genome_size_ungapped": "4792571", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "56", "contig_count": "56", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900184895.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "4635", "protein_coding_gene_count": "4517", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-07-23", "dateModified": "2017-07-23", "datePublished": "2017-07-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavimaricola marinus" ], "sample_taxid": [ "1819565" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.339 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4792571", "Number of Sequences": "56", "Longest Sequences (bp)": "1423956", "N50 (bp)": "404368", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.2", "Number of CDSs": "4570", "Average Protein Length": "314.1", "Coding Ratio (%)": "89.9", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavimaricola marinus", "strain": "strain=CECT 8899", "accession": "GCA_900184895.1", "taxid": 1819565, "species_taxid": 1819565, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1571, "total_fragments": 1571, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Thalassorhabdomicrobium marinisediminis", "strain": "strain=BH-SD16", "accession": "GCA_003072065.1", "taxid": 2170577, "species_taxid": 2170577, "relation_to_type": "type", "validated": true, "ani": 78.3128, "matched_fragments": 324, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 78.2468, "matched_fragments": 531, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola soesokkakensis", "strain": "strain=CECT 8367", "accession": "GCA_900172345.1", "taxid": 1343159, "species_taxid": 1343159, "relation_to_type": "type", "validated": true, "ani": 78.1856, "matched_fragments": 384, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola pyoseonensis", "strain": "strain=DSM 21424", "accession": "GCA_900102015.1", "taxid": 521013, "species_taxid": 521013, "relation_to_type": "type", "validated": true, "ani": 78.1354, "matched_fragments": 427, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola soesokkakensis", "strain": "strain=DSM 29956", "accession": "GCA_003014435.1", "taxid": 1343159, "species_taxid": 1343159, "relation_to_type": "type", "validated": true, "ani": 78.1117, "matched_fragments": 376, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola variabilis", "strain": "strain=CECT 8572", "accession": "GCA_014195545.1", "taxid": 1492771, "species_taxid": 1492771, "relation_to_type": "type", "validated": true, "ani": 78.0081, "matched_fragments": 386, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivita geojedonensis", "strain": "strain=DPG-138", "accession": "GCA_002115805.1", "taxid": 1123756, "species_taxid": 1123756, "relation_to_type": "type", "validated": true, "ani": 77.9352, "matched_fragments": 279, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nanhaiensis", "strain": "strain=DSM 18065", "accession": "GCA_000688295.1", "taxid": 375761, "species_taxid": 375761, "relation_to_type": "type", "validated": true, "ani": 77.8489, "matched_fragments": 371, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nanhaiensis", "strain": "strain=CGMCC 1.6293", "accession": "GCA_014645095.1", "taxid": 375761, "species_taxid": 375761, "relation_to_type": "type", "validated": true, "ani": 77.8421, "matched_fragments": 367, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia vestfoldensis", "strain": "strain=DSM 16212", "accession": "GCA_000382265.1", "taxid": 245188, "species_taxid": 245188, "relation_to_type": "type", "validated": true, "ani": 77.8082, "matched_fragments": 345, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola antarcticus", "strain": "strain=CGMCC 1.12662", "accession": "GCA_900215355.1", "taxid": 1247613, "species_taxid": 1247613, "relation_to_type": "type", "validated": true, "ani": 77.7796, "matched_fragments": 307, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nioella nitratireducens", "strain": "strain=SSW136", "accession": "GCA_001879715.1", "taxid": 1287720, "species_taxid": 1287720, "relation_to_type": "type", "validated": true, "ani": 77.7566, "matched_fragments": 304, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola antarcticus", "strain": "strain=Ar-45", "accession": "GCA_002786285.1", "taxid": 1247613, "species_taxid": 1247613, "relation_to_type": "type", "validated": true, "ani": 77.7561, "matched_fragments": 309, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 77.7122, "matched_fragments": 281, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mangrovi", "strain": "strain=GS-10", "accession": "GCA_009857745.1", "taxid": 2692236, "species_taxid": 2692236, "relation_to_type": "type", "validated": true, "ani": 77.5683, "matched_fragments": 326, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia marina", "strain": "strain=DSM 24838", "accession": "GCA_000379485.1", "taxid": 390641, "species_taxid": 390641, "relation_to_type": "type", "validated": true, "ani": 77.502, "matched_fragments": 410, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria marisrubri", "strain": "strain=ZGT118", "accession": "GCA_001507595.1", "taxid": 1685379, "species_taxid": 1685379, "relation_to_type": "type", "validated": true, "ani": 77.4964, "matched_fragments": 328, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia marina", "strain": "strain=DSM 24838", "accession": "GCA_000836695.1", "taxid": 390641, "species_taxid": 390641, "relation_to_type": "type", "validated": true, "ani": 77.4673, "matched_fragments": 424, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius aquimarinus", "strain": "strain=KMM 8518", "accession": "GCA_018219815.1", "taxid": 2785917, "species_taxid": 2785917, "relation_to_type": "type", "validated": true, "ani": 77.3613, "matched_fragments": 312, 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"below_threshold" }, { "organism_name": "Pseudooceanicola endophyticus", "strain": "strain=CBS1P-1", "accession": "GCA_018760365.1", "taxid": 2841273, "species_taxid": 2841273, "relation_to_type": "type", "validated": true, "ani": 77.1941, "matched_fragments": 331, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 77.1717, "matched_fragments": 289, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger marinus", "strain": "strain=DSM 26424", "accession": "GCA_900100085.1", "taxid": 555512, "species_taxid": 555512, "relation_to_type": "type", "validated": true, "ani": 77.1531, "matched_fragments": 363, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter viridis", "strain": "strain=JA737", "accession": "GCA_003217355.1", "taxid": 1054202, "species_taxid": 1054202, "relation_to_type": "type", "validated": true, "ani": 77.1113, "matched_fragments": 250, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax halotolerans", "strain": "strain=JCM 10271", "accession": "GCA_900115815.1", "taxid": 93684, "species_taxid": 93684, "relation_to_type": "type", "validated": true, "ani": 76.9625, "matched_fragments": 240, "total_fragments": 1571, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900184895.1", "gtdb_species": "s__Flavimaricola marinus", "ani": 100.0, "matched_fragments": 1571, "total_fragments": 1571, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Flavimaricola", 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001507595.1", "gtdb_species": "s__Ruegeria marisrubri", "ani": 77.5137, "matched_fragments": 326, "total_fragments": 1571, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Ruegeria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_006226775.1", "gtdb_species": "s__Marinovum sp006226775", "ani": 77.4712, "matched_fragments": 372, "total_fragments": 1571, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Marinovum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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