{ "type": "genome", "identifier": "GCF_900185015.1", "organism": "Octadecabacter ascidiaceicola", "title": "Octadecabacter ascidiaceicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UVEG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900185015.1", "bioproject": "PRJNA224116", "biosample": "SAMEA104102234", "wgs_master": "FXYD00000000.1", "refseq_category": "reference genome", "taxid": "1655543", "species_taxid": "1655543", "organism_name": "Octadecabacter ascidiaceicola", "infraspecific_name": "strain=CECT 8868", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/07/23", "asm_name": "O.ascidiaceicola_CECT8868_Spades_Prokka", "asm_submitter": "UVEG", "gbrs_paired_asm": "GCA_900185015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/185/015/GCF_900185015.1_O.ascidiaceicola_CECT8868_Spades_Prokka", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3233060", "genome_size_ungapped": "3233060", "gc_percent": "55.000000", "replicon_count": "0", "scaffold_count": "11", "contig_count": "11", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900185015.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "3293", "protein_coding_gene_count": "3214", "non_coding_gene_count": "44", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-07-23", "dateModified": "2017-07-23", "datePublished": "2017-07-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Octadecabacter ascidiaceicola" ], "sample_taxid": [ "1655543" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.919 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3233060", "Number of Sequences": "11", "Longest Sequences (bp)": "1067346", "N50 (bp)": "677144", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.9", "Number of CDSs": "3278", "Average Protein Length": "297.9", "Coding Ratio (%)": "90.6", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Octadecabacter ascidiaceicola", "strain": "strain=CECT 8868", "accession": "GCA_900185015.1", "taxid": 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77.4009, "matched_fragments": 280, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cognatiyoonia sediminum", "strain": "strain=DSM 28715", "accession": "GCA_900129845.1", "taxid": 1508389, "species_taxid": 1508389, "relation_to_type": "type", "validated": true, "ani": 76.983, "matched_fragments": 144, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter litoreus", "strain": "strain=ASW11-22", "accession": "GCA_020165855.1", "taxid": 2876714, "species_taxid": 2876714, "relation_to_type": "type", "validated": true, "ani": 76.8702, "matched_fragments": 108, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Palleronia rufa", "strain": "strain=MOLA 401", "accession": "GCA_000743715.1", "taxid": 1530186, "species_taxid": 1530186, "relation_to_type": "type", "validated": true, "ani": 76.4538, "matched_fragments": 58, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 76.2883, "matched_fragments": 102, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola sediminis", "strain": "strain=DRYC-M-16", "accession": "GCA_004745575.1", "taxid": 2486418, "species_taxid": 2486418, "relation_to_type": "type", "validated": true, "ani": 76.2525, "matched_fragments": 75, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900185015.1", "gtdb_species": "s__Octadecabacter ascidiaceicola", "ani": 100.0, "matched_fragments": 1069, "total_fragments": 1072, "gtdb_taxonomy": 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