{ "type": "genome", "identifier": "GCF_900185935.1", "organism": "Enterobacter soli", "title": "Enterobacter soli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JUSTUS LIEBIG UNIVERSITY", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900185935.1", "bioproject": "PRJNA224116", "biosample": "SAMEA104113920", "wgs_master": "FYBB00000000.1", "refseq_category": "na", "taxid": "885040", "species_taxid": "885040", "organism_name": "Enterobacter soli", "infraspecific_name": "na", "isolate": "Enterobacter soli LMG 25861T", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/06/15", "asm_name": "Enterobacter_soli_LMG_25861T_ERS954912", "asm_submitter": "JUSTUS LIEBIG UNIVERSITY", "gbrs_paired_asm": "GCA_900185935.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/185/935/GCF_900185935.1_Enterobacter_soli_LMG_25861T_ERS954912", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5020403", "genome_size_ungapped": "5020403", "gc_percent": "54.000000", "replicon_count": "0", "scaffold_count": "131", "contig_count": "131", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900185935.1-RS_2024_07_28", "annotation_date": "2024-07-28", "total_gene_count": "4844", "protein_coding_gene_count": "4662", "non_coding_gene_count": "94", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-06-15", "dateModified": "2017-06-15", "datePublished": "2017-06-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterobacter soli" ], "sample_taxid": [ "885040" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.426 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5020106", "Number of Sequences": "129", "Longest Sequences (bp)": "1279754", "N50 (bp)": "440719", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.8", "Number of CDSs": "4664", "Average Protein Length": "316.4", "Coding Ratio (%)": "88.2", "Number of rRNAs": "3", "Number of tRNAs": "79", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterobacter soli", "strain": "", "accession": "GCA_900185935.1", "taxid": 885040, "species_taxid": 885040, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1641, "total_fragments": 1642, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter soli", "strain": "strain=ATCC BAA-2102", "accession": "GCA_001654845.1", "taxid": 885040, "species_taxid": 885040, "relation_to_type": "type", "validated": true, "ani": 99.9808, "matched_fragments": 1604, "total_fragments": 1642, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter oligotrophicus", "strain": "strain=CCA6", "accession": "GCA_009176645.1", "taxid": 2478464, "species_taxid": 2478464, "relation_to_type": "type", "validated": true, "ani": 87.1189, "matched_fragments": 1219, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter mori", "strain": "strain=LMG 25706", "accession": "GCA_000211415.1", "taxid": 539813, "species_taxid": 539813, "relation_to_type": "type", "validated": true, "ani": 86.8952, "matched_fragments": 1201, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter asburiae", "strain": "strain=ATCC 35953", "accession": "GCA_001521715.1", "taxid": 61645, "species_taxid": 61645, "relation_to_type": "type", "validated": true, "ani": 86.8713, "matched_fragments": 1173, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 86.8531, "matched_fragments": 1231, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 86.6592, "matched_fragments": 1192, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter ludwigii", "strain": "strain=EN-119", "accession": "GCA_000818595.1", "taxid": 299767, "species_taxid": 299767, "relation_to_type": "type", "validated": true, "ani": 86.554, "matched_fragments": 1220, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter ludwigii", "strain": "strain=EN-119", "accession": "GCA_001750725.1", "taxid": 299767, "species_taxid": 299767, "relation_to_type": "type", "validated": true, "ani": 86.5441, "matched_fragments": 1221, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter bugandensis", "strain": "strain=FDAARGOS 1427", "accession": "GCA_019046905.1", "taxid": 881260, "species_taxid": 881260, "relation_to_type": "type", "validated": true, "ani": 86.5149, "matched_fragments": 1244, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=DSM 30054", "accession": "GCA_021469225.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 86.4884, "matched_fragments": 1239, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter bugandensis", "strain": "", "accession": "GCA_900324475.1", "taxid": 881260, "species_taxid": 881260, "relation_to_type": "type", "validated": true, "ani": 86.4814, "matched_fragments": 1225, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=ATCC 13047", "accession": "GCA_000755525.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 86.4655, "matched_fragments": 1266, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 86.4626, "matched_fragments": 1210, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. oharae", "strain": "strain=FDAARGOS_1533", "accession": "GCA_020097195.1", "taxid": 301102, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 86.2816, "matched_fragments": 1207, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 86.2713, "matched_fragments": 1181, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. hormaechei", "strain": "strain=ATCC 49162", "accession": "GCA_001875655.1", "taxid": 301105, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 86.2533, "matched_fragments": 1188, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. hormaechei", "strain": "strain=ATCC 49162", "accession": "GCA_000213995.1", "taxid": 301105, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 86.244, "matched_fragments": 1181, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. oharae", "strain": "strain=DSM 16687", "accession": "GCA_001729705.1", "taxid": 301102, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 86.2262, "matched_fragments": 1213, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001654845.1", "gtdb_species": "s__Enterobacter soli", "ani": 99.9808, "matched_fragments": 1604, "total_fragments": 1642, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.85", "min_intra_species_ani": "97.23", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_013927005.1", "gtdb_species": "s__Enterobacter sp013927005", "ani": 94.4084, "matched_fragments": 1396, "total_fragments": 1642, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009176645.1", "gtdb_species": "s__Enterobacter oligotrophicus", "ani": 87.1133, "matched_fragments": 1220, "total_fragments": 1642, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.55", "min_intra_species_ani": "99.09", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000211415.1", "gtdb_species": "s__Enterobacter mori", "ani": 86.8991, "matched_fragments": 1201, "total_fragments": 1642, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.59", "min_intra_species_ani": "96.13", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.85", "num_clustered_genomes": 23, "status": "-" }, { "accession": "GCF_003594935.1", "gtdb_species": "s__Enterobacter huaxiensis", "ani": 86.8634, "matched_fragments": 1260, "total_fragments": 1642, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.98", "min_intra_species_ani": "98.98", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004331265.1", "gtdb_species": "s__Enterobacter wuhouensis", "ani": 86.853, "matched_fragments": 1231, "total_fragments": 1642, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003046225.1", "gtdb_species": "s__Enterobacter cloacae_I", "ani": 86.8386, "matched_fragments": 1217, "total_fragments": 1642, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.61", "min_intra_species_ani": "95.47", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.86", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_003634515.1", "gtdb_species": "s__Enterobacter asburiae_A", "ani": 86.8377, "matched_fragments": 1227, "total_fragments": 1642, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 96.0274, "mean_intra_species_ani": "97.62", "min_intra_species_ani": "96.46", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_007035645.1", "gtdb_species": "s__Enterobacter asburiae_B", "ani": 86.8131, "matched_fragments": 1231, "total_fragments": 1642, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 96.8818, "mean_intra_species_ani": "98.31", "min_intra_species_ani": "97.34", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 70, "status": "-" }, { "accession": "GCF_008080435.1", "gtdb_species": "s__Enterobacter asburiae_C", "ani": 86.8023, "matched_fragments": 1227, "total_fragments": 1642, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.5575, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003594915.1", "gtdb_species": "s__Enterobacter chuandaensis", "ani": 86.6411, "matched_fragments": 1216, "total_fragments": 1642, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.38", "min_intra_species_ani": "98.32", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001750725.1", "gtdb_species": "s__Enterobacter ludwigii", "ani": 86.5457, "matched_fragments": 1221, "total_fragments": 1642, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "98.47", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.83", "num_clustered_genomes": 88, "status": "-" }, { "accession": 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"GCF_011078175.1", "gtdb_species": "s__Enterobacter cloacae_Q", "ani": 86.0263, "matched_fragments": 1180, "total_fragments": 1642, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 31.5, "optimum_ph": 5.75, "genome_size": 4862814.485, "gc_content": 55.35, "coding_genes": 4535.096, "rRNA16S_genes": 7.95, "tRNA_genes": 84.309, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.833, "range_salinity": 1.0, "facultative_respiration": 0.428, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.571, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 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