# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_56	LOCUS_00560	sequence1:62853..63395(+)	frameshift,internal_stop_codon	62796..62798(+)	63368	WP_009931192.1	type VII secretion protein EssB	96.1	43.5	82.1
MGA_57	LOCUS_00570	sequence1:63503..63931(+)	frameshift		63371	WP_009931192.1	type VII secretion protein EssB	100.0	35.7	86.6
MGA_63	LOCUS_00630	sequence1:70179..72029(+)	partial			WP_010989332.1	toxin	70.8	70.4	69.9
MGA_79	LOCUS_00790	sequence1:87197..90355(+)	partial			WP_011202044.1	hypothetical protein	73.0	83.3	25.5
MGA_93	LOCUS_00930	sequence1:102508..103908(+)	partial			WP_146623251.1	beta-glucoside-specific PTS transporter subunit IIABC	95.7	71.6	43.0
MGA_120	LOCUS_01200	sequence1:130132..130731(+)	frameshift		130728	WP_010989431.1	LXG domain-containing protein	100.0	40.5	77.4
MGA_130	LOCUS_01300	sequence1:141609..142388(+)	partial			WP_034349500.1	serine hydrolase	73.7	72.5	29.4
MGA_210	LOCUS_02080	sequence1:242882..243631(-)	frameshift		243693,243054	WP_002901594.1	glycyl-radical enzyme activating protein	80.7	80.6	49.5
MGA_213	LOCUS_02110	sequence1:245779..247287(+)	internal_stop_codon	245767..245769(+)		WP_002263031.1	glycyl radical protein	98.2	63.2	31.8
MGA_257	LOCUS_02550	sequence1:290292..290420(-)	frameshift		290502	WP_009930487.1	Cof-type HAD-IIB family hydrolase	100.0	15.4	85.7
MGA_258	LOCUS_02560	sequence1:290461..291066(-)	frameshift		290502	WP_009930487.1	Cof-type HAD-IIB family hydrolase	94.0	69.2	86.2
MGA_296	LOCUS_02940	sequence1:323317..324924(+)	partial			WP_010989982.1	lmo2396 family class 1 internalin	22.8	13.0	45.9
MGA_338	LOCUS_03360	sequence1:360730..360948(+)	frameshift		360976,360897,361064	WP_003723107.1	GNAT family N-acetyltransferase	80.6	41.1	63.8
MGA_340	LOCUS_03380	sequence1:362748..363995(+)	partial			WP_000527072.1	M4 family metallopeptidase	63.1	27.1	32.2
MGA_354	LOCUS_03520	sequence1:374320..374625(-)	partial			WP_010989454.1	cell envelope integrity protein TolA	58.4	20.3	81.4
MGA_363	LOCUS_03610	sequence1:381941..383488(+)	partial			WP_010989463.1	GW domain-containing class 2 internalin InlB	75.0	58.3	39.5
MGA_366	LOCUS_03640	sequence1:389951..393520(+)	partial			WP_010989452.1	class 1 internalin InlF	51.5	77.7	45.2
MGA_383	LOCUS_03810	sequence1:413525..413992(+)	frameshift		413977	WP_010989431.1	LXG domain-containing protein	97.4	30.8	86.1
MGA_384	LOCUS_03820	sequence1:414001..414945(+)	frameshift		413977	WP_010989431.1	LXG domain-containing protein	75.2	46.8	65.8
MGA_415	LOCUS_04130	sequence1:440580..440753(-)	partial			WP_003732113.1	hypothetical protein	98.2	70.9	57.1
MGA_439	LOCUS_04370	sequence1:461723..462967(+)	partial			WP_012256270.1	extracellular solute-binding protein	49.3	47.1	31.0
MGA_442	LOCUS_04400	sequence1:464791..467220(+)	partial			WP_008766599.1	glycoside hydrolase family 38 C-terminal domain-containing protein	96.4	63.9	24.7
MGA_537	LOCUS_05350	sequence1:568050..568412(+)	frameshift		568385	WP_003724062.1	GNAT family N-acetyltransferase	95.8	69.3	88.7
MGA_538	LOCUS_05360	sequence1:568414..568557(+)	frameshift		568385	WP_003724062.1	GNAT family N-acetyltransferase	100.0	28.3	89.4
MGA_553	LOCUS_05510	sequence1:580823..581329(+)	frameshift		581368,580701,580719	WP_003722812.1	glycerophosphodiester phosphodiesterase	92.3	26.6	78.1
MGA_556	LOCUS_05540	sequence1:583375..583638(+)	frameshift		583620	WP_003722815.1	hypothetical protein	97.7	56.3	88.2
MGA_557	LOCUS_05550	sequence1:583664..583831(+)	frameshift		583620	WP_003722815.1	hypothetical protein	100.0	36.4	96.4
MGA_577	LOCUS_05750	sequence1:606453..606611(+)	frameshift		606453	WP_010989344.1	F0F1 ATP synthase subunit delta	98.1	14.9	80.4
MGA_612	LOCUS_06100	sequence1:646693..647214(+)	partial			WP_010989987.1	hypothetical protein	61.8	59.6	40.0
MGA_677	LOCUS_06750	sequence1:704762..704971(-)	partial			WP_003721846.1	LPXTG cell wall anchor domain-containing protein	71.0	71.4	54.0
MGA_699	LOCUS_06970	sequence1:725748..726557(+)	internal_stop_codon	726555..726557(+)		WP_011087473.1	nucleoside hydrolase	97.8	83.4	39.0
MGA_700	LOCUS_06980	sequence1:726696..727502(+)	frameshift		727427	WP_010990070.1	PTS beta-glucoside transporter subunit IIBCA	95.5	38.8	49.4
MGA_701	LOCUS_06990	sequence1:727505..728113(+)	frameshift,internal_stop_codon	728181..728183(+),728112..728114(+)	728264,727433	WP_010990070.1	PTS beta-glucoside transporter subunit IIBCA	100.0	31.6	49.0
MGA_702	LOCUS_07000	sequence1:728280..728483(+)	frameshift		728263	WP_000473653.1	PTS glucose transporter subunit IIA	98.5	39.8	54.5
MGA_703	LOCUS_07010	sequence1:728483..728713(+)	frameshift		728707	WP_002356180.1	purine-nucleoside phosphorylase	98.7	27.6	54.7
MGA_704	LOCUS_07020	sequence1:728752..728994(+)	frameshift		728986,728707	WP_002356180.1	purine-nucleoside phosphorylase	93.8	27.6	61.3
MGA_705	LOCUS_07030	sequence1:729036..729299(+)	frameshift		728985	WP_002289198.1	purine-nucleoside phosphorylase	96.6	30.9	66.7
MGA_737	LOCUS_07350	sequence1:762348..763994(+)	partial			WP_011031530.1	hypothetical protein	46.0	30.4	25.3
MGA_756	LOCUS_07540	sequence1:781578..782066(-)	internal_stop_codon	781578..781580(-)		WP_002354705.1	MurR/RpiR family transcriptional regulator	93.2	53.0	32.5
MGA_757	LOCUS_07550	sequence1:782285..783010(+)	frameshift		782998	WP_003732901.1	hypothetical protein	99.2	71.6	41.1
MGA_758	LOCUS_07560	sequence1:783049..783258(+)	frameshift		782998	WP_003732901.1	hypothetical protein	100.0	22.3	53.6
MGA_775	LOCUS_07730	sequence1:799333..802509(-)	partial			WP_010989427.1	class 1 internalin InlI	85.4	49.3	33.5
MGA_777	LOCUS_07750	sequence1:803877..804893(+)	internal_stop_codon	803865..803867(+)		WP_003733311.1	SpaA isopeptide-forming pilin-related protein	92.0	51.3	37.0
MGA_793	LOCUS_07910	sequence1:827984..828685(+)	frameshift		828661	WP_010989455.1	Cof-type HAD-IIB family hydrolase	97.4	84.1	75.8
MGA_800	LOCUS_07980	sequence1:834745..836724(+)	partial			WP_010989982.1	lmo2396 family class 1 internalin	69.7	47.1	31.2
MGA_802	LOCUS_08000	sequence1:837250..838575(+)	partial			WP_010989982.1	lmo2396 family class 1 internalin	80.3	38.9	26.5
MGA_821	LOCUS_08190	sequence1:859541..862444(-)	internal_stop_codon	862532..862534(-)		WP_002209115.1	putative mucin/carbohydrate-binding domain-containing protein	70.2	80.3	32.5
MGA_822	LOCUS_08200	sequence1:862532..863008(-)	internal_stop_codon	862532..862534(-)		WP_078404002.1	putative mucin/carbohydrate-binding domain-containing protein	92.4	20.1	40.3
MGA_824	LOCUS_08220	sequence1:864170..864787(+)	partial			WP_010989600.1	amidohydrolase family protein	100.0	61.7	82.0
MGA_830	LOCUS_08280	sequence1:867364..867702(+)	partial			WP_010989601.1	MFS transporter	100.0	28.9	85.7
MGA_948	LOCUS_09460	sequence1:976466..976885(+)	frameshift		976870	WP_010989634.1	ABC transporter permease	96.4	47.2	88.8
MGA_949	LOCUS_09470	sequence1:976911..977321(+)	frameshift		976870	WP_010989634.1	ABC transporter permease	100.0	47.9	80.1
MGA_963	LOCUS_09610	sequence1:991860..992078(-)	partial			WP_003722866.1	YkvS family protein	83.3	63.8	100.0
MGA_1012	LOCUS_10100	sequence1:1036611..1036799(+)	partial			WP_010989650.1	flavin reductase	88.7	29.9	83.6
MGA_1029	LOCUS_10270	sequence1:1054684..1056699(-)	partial			WP_010990014.1	autolysin Ami	40.7	31.2	46.9
MGA_1039	LOCUS_10370	sequence1:1069454..1071742(+)	partial			WP_003243594.1	beta-N-acetylglucosaminidase LytD	51.3	42.0	38.4
MGA_1043	LOCUS_10410	sequence1:1075814..1078165(+)	partial			WP_010989657.1	CDP-glycerol glycerophosphotransferase family protein	61.7	66.5	39.3
MGA_1046	LOCUS_10440	sequence1:1080103..1081476(+)	partial			WP_009968267.1	glycosyltransferase family 2 protein	70.7	71.7	42.6
MGA_1047	LOCUS_10450	sequence1:1081498..1082652(+)	partial			WP_003243463.1	teichoic acid poly(glycerol phosphate) polymerase	99.0	51.3	57.3
MGA_1055	LOCUS_10530	sequence1:1089896..1090189(-)	frameshift		1089736,1089913,1089940	WP_180269231.1	IS3 family transposase	95.9	24.7	35.1
MGA_1059	LOCUS_10570	sequence1:1092775..1093101(+)	internal_stop_codon	1093099..1093101(+)		WP_010989431.1	LXG domain-containing protein	91.7	20.2	56.6
MGA_1060	LOCUS_10580	sequence1:1093396..1094016(+)	partial			WP_010989360.1	hypothetical protein	44.7	44.9	48.9
MGA_1065	LOCUS_10630	sequence1:1096607..1096798(+)	internal_stop_codon	1096376..1096378(+)		WP_010989686.1	hypothetical protein	95.2	33.9	95.0
MGA_1068	LOCUS_10660	sequence1:1097596..1097823(+)	internal_stop_codon	1097821..1097823(+)		WP_010989685.1	hypothetical protein	98.7	53.2	66.2
MGA_1069	LOCUS_10670	sequence1:1097830..1098012(+)	internal_stop_codon	1097821..1097823(+)		WP_010989685.1	hypothetical protein	98.3	43.2	63.3
MGA_1086	LOCUS_10840	sequence1:1113741..1114013(+)	frameshift		1113748	WP_003723189.1	inorganic diphosphatase	95.6	69.9	62.8
MGA_1087	LOCUS_10850	sequence1:1114808..1116295(+)	partial			WP_015776044.1	glycoside hydrolase family 3 N-terminal domain-containing protein	92.5	66.5	30.9
MGA_1178	LOCUS_11760	sequence1:1188169..1188306(+)	partial			WP_109983297.1	IS200/IS605 family transposase	93.3	26.4	81.0
MGA_1180	LOCUS_11780	sequence1:1189977..1190171(+)	frameshift		1189993,1189959	WP_109983297.1	IS200/IS605 family transposase	87.5	35.2	75.0
MGA_1186	LOCUS_11840	sequence1:1195836..1196285(+)	frameshift		1196267	WP_003721621.1	ABC transporter ATP-binding protein	96.6	61.8	93.8
MGA_1187	LOCUS_11850	sequence1:1196257..1196535(+)	frameshift		1196267	WP_003721621.1	ABC transporter ATP-binding protein	98.9	39.1	85.7
MGA_1208	LOCUS_12060	sequence1:1224936..1228259(+)	partial			WP_010990014.1	autolysin Ami	57.2	70.0	53.7
MGA_1210	LOCUS_12080	sequence1:1230335..1231027(+)	partial			WP_010989812.1	class 3 internalin InlC	57.8	44.9	65.4
MGA_1211	LOCUS_12090	sequence1:1231365..1232327(+)	partial			WP_010989385.1	class 1 internalin InlG	79.7	56.5	37.4
MGA_1287	LOCUS_12850	sequence1:1305903..1306433(-)	frameshift		1306501	WP_009930695.1	class I SAM-dependent methyltransferase	99.4	72.0	71.4
MGA_1288	LOCUS_12860	sequence1:1306487..1306633(-)	frameshift		1306501	WP_009930695.1	class I SAM-dependent methyltransferase	97.9	19.3	87.2
MGA_1392	LOCUS_13900	sequence1:1413025..1413321(-)	frameshift		1413397	WP_012546237.1	site-specific tyrosine recombinase XerD	95.9	31.6	42.6
MGA_1393	LOCUS_13910	sequence1:1413395..1413901(-)	frameshift		1413397	WP_001015601.1	tyrosine recombinase XerC	98.2	57.0	24.9
MGA_1395	LOCUS_13930	sequence1:1414453..1414725(+)	frameshift		1414701	WP_003732480.1	Rgg/GadR/MutR family transcriptional regulator	93.3	27.8	36.9
MGA_1401	LOCUS_13990	sequence1:1417512..1422116(-)	frameshift		1422148	WP_010989464.1	LapB repeat-containing protein	99.9	75.8	64.5
MGA_1402	LOCUS_14000	sequence1:1422125..1423588(-)	frameshift		1422148	WP_010989464.1	LapB repeat-containing protein	98.2	23.2	50.9
MGA_1422	LOCUS_14200	sequence1:1445093..1445548(-)	internal_stop_codon	1445093..1445095(-)		WP_010990121.1	hypothetical protein	100.0	70.4	77.0
MGA_1465	LOCUS_14630	sequence1:1489655..1489882(-)	internal_stop_codon	1489907..1489909(-),1489646..1489648(-),1489655..1489657(-)		WP_010990135.1	aldehyde reductase	100.0	23.7	66.7
MGA_1466	LOCUS_14640	sequence1:1489907..1490140(-)	internal_stop_codon	1489907..1489909(-),1489646..1489648(-),1489655..1489657(-)		WP_010990135.1	aldehyde reductase	97.4	23.4	72.5
MGA_1539	LOCUS_15370	sequence1:1562404..1562661(-)	partial			WP_010989739.1	A24 family peptidase	100.0	36.0	68.2
MGA_1610	LOCUS_16080	sequence1:1644069..1644770(-)	frameshift		1644784	WP_003723579.1	MBL fold metallo-hydrolase	100.0	82.7	78.2
MGA_1611	LOCUS_16090	sequence1:1644767..1644916(-)	frameshift		1644784	WP_003723579.1	MBL fold metallo-hydrolase	89.8	15.5	88.6
MGA_1620	LOCUS_16180	sequence1:1651195..1652925(-)	internal_stop_codon	1653010..1653012(-)		WP_010989332.1	toxin	68.8	63.7	66.6
MGA_1659	LOCUS_16570	sequence1:1697850..1697990(-)	partial			WP_004399108.1	N-acetylmuramoyl-L-alanine amidase BlyA	93.5	11.7	81.4
MGA_1665	LOCUS_16630	sequence1:1701121..1702215(-)	partial			WP_011860984.1	DUF4041 domain-containing protein	100.0	66.1	41.7
MGA_1672	LOCUS_16700	sequence1:1708390..1709334(+)	partial			WP_015776036.1	GNAT family N-acetyltransferase	76.8	74.2	27.5
MGA_1816	LOCUS_18110	sequence1:1868509..1870518(-)	partial			WP_010989814.1	LPXTG cell wall anchor domain-containing protein	33.8	25.1	88.1
MGA_1889	LOCUS_18840	sequence1:1943910..1945271(-)	partial			WP_010965588.1	M4 family metallopeptidase	29.6	16.0	48.5
MGA_1916	LOCUS_19110	sequence1:1971744..1972277(-)	frameshift		1972291	WP_011028048.1	DNA alkylation repair protein	97.7	68.6	26.6
MGA_1985	LOCUS_19800	sequence1:2040343..2040615(-)	partial			WP_165992825.1	IS3 family transposase	91.1	21.5	46.3
MGA_2004	LOCUS_19990	sequence1:2061821..2061958(+)	partial			WP_003727979.1	hypothetical protein	71.1	71.1	96.9
MGA_2094	LOCUS_20890	sequence1:2157182..2158855(-)	internal_stop_codon	2157120..2157122(-),2156889..2156891(-)		WP_010989462.1	class 1 internalin InlA	83.7	57.0	40.0
MGA_2112	LOCUS_21070	sequence1:2173276..2174508(-)	frameshift		2174467	WP_010989891.1	SpaA isopeptide-forming pilin-related protein	96.1	69.6	65.4
MGA_2113	LOCUS_21080	sequence1:2174429..2174980(-)	frameshift		2174467	WP_010989891.1	SpaA isopeptide-forming pilin-related protein	92.9	30.1	68.8
MGA_2118	LOCUS_21130	sequence1:2179747..2180166(+)	frameshift		2180082	WP_000542320.1	Fic family protein	96.4	36.0	38.4
MGA_2119	LOCUS_21140	sequence1:2180406..2180930(+)	frameshift		2180912	WP_000542320.1	Fic family protein	94.8	38.9	41.7
MGA_2134	LOCUS_21290	sequence1:2194996..2197092(-)	partial			WP_010989452.1	class 1 internalin InlF	41.8	32.2	32.7
MGA_2158	LOCUS_21530	sequence1:2220465..2221754(-)	partial			WP_003243411.1	major teichoic acid biosynthesis protein C	59.4	58.6	27.5
MGA_2169	LOCUS_21640	sequence1:2236180..2236545(-)	frameshift		2236517	WP_003722255.1	Crp/Fnr family transcriptional regulator	79.3	41.9	87.5
MGA_2170	LOCUS_21650	sequence1:2236455..2236892(-)	frameshift		2236517	WP_003722255.1	Crp/Fnr family transcriptional regulator	84.1	53.3	82.0
MGA_2303	LOCUS_22980	sequence1:2379559..2379795(-)	partial			WP_003723667.1	IDEAL domain-containing protein	100.0	66.1	91.0
MGA_2366	LOCUS_23590	sequence1:2446354..2446665(-)	frameshift		2446673	WP_011140193.1	aldo/keto reductase	87.4	27.6	47.8
MGA_2367	LOCUS_23600	sequence1:2446662..2447315(-)	frameshift		2446697	WP_011975421.1	aldo/keto reductase	94.5	61.7	54.1
MGA_2382	LOCUS_23750	sequence1:2461282..2461494(-)	partial			WP_003723326.1	thioredoxin family protein	100.0	74.5	70.0
MGA_2398	LOCUS_23910	sequence1:2473608..2473790(-)	internal_stop_codon	2473800..2473802(-)		WP_009932617.1	effector binding domain-containing protein	93.3	44.1	66.1
MGA_2399	LOCUS_23920	sequence1:2473800..2473991(-)	internal_stop_codon	2473800..2473802(-)		WP_009932617.1	effector binding domain-containing protein	96.8	48.0	78.7
MGA_2402	LOCUS_23950	sequence1:2476699..2478996(-)	internal_stop_codon	2479006..2479008(-)		WP_010989993.1	glycoside hydrolase family 31 protein	99.5	58.1	89.5
MGA_2403	LOCUS_23960	sequence1:2479006..2480622(-)	internal_stop_codon	2479006..2479008(-)		WP_010989993.1	glycoside hydrolase family 31 protein	100.0	41.3	89.6
MGA_2427	LOCUS_24200	sequence1:2508885..2509736(-)	internal_stop_codon	2510004..2510006(-)		WP_010989999.1	polysaccharide monooxygenase	99.6	59.0	74.8
MGA_2428	LOCUS_24210	sequence1:2510004..2510321(-)	internal_stop_codon	2510004..2510006(-)		WP_010989999.1	polysaccharide monooxygenase	100.0	22.0	81.9
MGA_2498	LOCUS_24910	sequence1:2580608..2581096(-)	partial			WP_003732518.1	F0F1 ATP synthase subunit A	100.0	68.1	95.7
MGA_2560	LOCUS_25520	sequence1:2646999..2648267(-)	internal_stop_codon	2648298..2648300(-)		WP_011100911.1	discoidin domain-containing protein	96.0	43.5	26.3
MGA_2561	LOCUS_25530	sequence1:2648298..2649059(-)	internal_stop_codon	2648298..2648300(-)		WP_236023556.1	discoidin domain-containing protein	88.5	22.9	29.7
MGA_2628	LOCUS_26200	sequence1:2700171..2700893(+)	frameshift		2700773	WP_003722014.1	deoxyguanosinetriphosphate triphosphohydrolase	85.8	44.3	58.0
MGA_2629	LOCUS_26210	sequence1:2700800..2701558(+)	frameshift		2700773	WP_003722014.1	deoxyguanosinetriphosphate triphosphohydrolase	99.6	54.2	47.0
MGA_2632	LOCUS_26240	sequence1:2703650..2705113(+)	partial			WP_010989982.1	lmo2396 family class 1 internalin	75.4	39.4	26.4
MGA_2665	LOCUS_26570	sequence1:2740501..2741844(+)	partial			WP_010990043.1	1,4-beta-N-acetylmuramoylhydrolase	87.9	68.8	64.1
MGA_2679	LOCUS_26710	sequence1:2751891..2752163(-)	partial			WP_003722585.1	amino acid ABC transporter ATP-binding protein	93.3	39.4	36.3
MGA_2685	LOCUS_26770	sequence1:2756564..2758942(-)	partial			WP_000527072.1	M4 family metallopeptidase	36.5	33.0	35.1
MGA_2693	LOCUS_26850	sequence1:2767000..2768091(-)	partial			WP_071743885.1	nucleoside-diphosphate sugar epimerase/dehydratase	93.9	57.0	51.2
MGA_2697	LOCUS_26890	sequence1:2770043..2773120(-)	partial			WP_010989418.1	cell invasion LPXTG protein Vip	24.3	56.1	28.7
MGA_2698	LOCUS_26900	sequence1:2773249..2773797(-)	frameshift,internal_stop_codon	2773800..2773802(-)	2773814	WP_003722255.1	Crp/Fnr family transcriptional regulator	92.3	73.4	29.8
MGA_2716	LOCUS_27080	sequence1:2789100..2789303(-)	partial			WP_003727657.1	DUF3188 domain-containing protein	74.6	83.3	80.0
MGA_2776	LOCUS_27680	sequence1:2850119..2850634(+)	frameshift		2849967	WP_010989392.1	glycoside hydrolase family 1 protein	63.2	22.6	53.7
MGA_2777	LOCUS_27690	sequence1:2850670..2851026(+)	frameshift		2850631	WP_003548211.1	beta-glucoside-specific PTS transporter subunit IIABC	83.1	13.4	50.0
MGA_2810	LOCUS_28020	sequence1:2881174..2883834(+)	partial			WP_011674154.1	DUF5011 domain-containing protein	52.5	84.3	29.7
MGA_2811	LOCUS_28030	sequence1:2883884..2885857(-)	partial			WP_010989363.1	LPXTG cell wall anchor domain-containing protein	23.9	22.1	25.1
