{ "type": "genome", "identifier": "GCF_900187085.1", "organism": "Streptococcus merionis", "title": "Streptococcus merionis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900187085.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4412692", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "400065", "species_taxid": "400065", "organism_name": "Streptococcus merionis", "infraspecific_name": "strain=NCTC13788", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/15", "asm_name": "50624_E01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900187085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/187/085/GCF_900187085.1_50624_E01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2384128", "genome_size_ungapped": "2384128", "gc_percent": "42.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900187085.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "2228", "protein_coding_gene_count": "2111", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-15", "dateModified": "2017-08-15", "datePublished": "2017-08-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus merionis" ], "sample_taxid": [ "400065" ], "sample_host_organism": [ "Mongolian Jird" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "0.677 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2384128", "Number of Sequences": "1", "Longest Sequences (bp)": "2384128", "N50 (bp)": "2384128", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.8", "Number of CDSs": "2171", "Average Protein Length": "305.9", "Coding Ratio (%)": "83.6", "Number of rRNAs": "12", "Number of tRNAs": "53", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus merionis", "strain": "strain=NCTC13788", "accession": "GCA_900187085.1", "taxid": 400065, "species_taxid": 400065, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 793, "total_fragments": 794, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus merionis", "strain": "strain=DSM 19192", "accession": "GCA_000380085.1", "taxid": 400065, "species_taxid": 400065, "relation_to_type": "type", "validated": true, "ani": 99.9671, "matched_fragments": 772, "total_fragments": 794, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus pyogenes", "strain": "strain=PartK-Spyogenes-RM8376", "accession": "GCA_022869605.1", "taxid": 1314, "species_taxid": 1314, "relation_to_type": "type", "validated": true, "ani": 80.2809, "matched_fragments": 70, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus salivarius", "strain": "strain=NCTC 8618", "accession": "GCA_000785515.1", "taxid": 1304, "species_taxid": 1304, "relation_to_type": "suspected-type", "validated": true, "ani": 79.6248, "matched_fragments": 70, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus constellatus subsp. constellatus", "strain": "strain=CCUG 24889", "accession": "GCA_023167545.1", "taxid": 184246, "species_taxid": 76860, "relation_to_type": "type", "validated": true, "ani": 79.5244, "matched_fragments": 64, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus timonensis", "strain": "strain=Marseille-P2915", "accession": "GCA_900095845.1", "taxid": 1852387, "species_taxid": 1852387, "relation_to_type": "type", "validated": true, "ani": 79.3834, "matched_fragments": 84, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus toyakuensis", "strain": "strain=TP1632", "accession": "GCA_024346585.1", "taxid": 2819619, "species_taxid": 2819619, "relation_to_type": "type", "validated": true, "ani": 79.2811, "matched_fragments": 89, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ruminantium", "strain": "strain=GUT187T", "accession": "GCA_003609975.1", "taxid": 1917441, "species_taxid": 1917441, "relation_to_type": "type", "validated": true, "ani": 79.2011, "matched_fragments": 86, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus saliviloxodontae", "strain": "strain=DSM 27513", "accession": "GCA_016908655.1", "taxid": 1349416, "species_taxid": 1349416, "relation_to_type": "type", "validated": true, "ani": 78.9669, "matched_fragments": 68, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus salivarius", "strain": "strain=JCM 5707", "accession": "GCA_019972895.1", "taxid": 1304, "species_taxid": 1304, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4435, "matched_fragments": 65, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ovis", "strain": "strain=DSM 16829", "accession": "GCA_000380125.1", "taxid": 82806, "species_taxid": 82806, "relation_to_type": "type", "validated": true, "ani": 78.2967, "matched_fragments": 110, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 78.0327, "matched_fragments": 78, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus shenyangsis", "strain": "strain=D19", "accession": "GCA_006385785.1", "taxid": 2589786, "species_taxid": 2589786, "relation_to_type": "type", "validated": true, "ani": 77.9564, "matched_fragments": 84, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus symci", "strain": "strain=C17", "accession": "GCA_006385165.1", "taxid": 2588991, "species_taxid": 2588991, "relation_to_type": "type", 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83, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus azizii", "strain": "strain=12-5202", "accession": "GCA_001984715.1", "taxid": 1579424, "species_taxid": 1579424, "relation_to_type": "type", "validated": true, "ani": 77.768, "matched_fragments": 86, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus orisratti", "strain": "strain=DSM 15617", "accession": "GCA_000380105.1", "taxid": 114652, "species_taxid": 114652, "relation_to_type": "type", "validated": true, "ani": 77.7385, "matched_fragments": 83, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000380085.1", "gtdb_species": "s__Streptococcus merionis", "ani": 99.9671, "matched_fragments": 772, "total_fragments": 794, "gtdb_taxonomy": 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