{ "type": "genome", "identifier": "GCF_900187185.1", "organism": "Chryseobacterium taklimakanense", "title": "Chryseobacterium taklimakanense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900187185.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4412677", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "536441", "species_taxid": "536441", "organism_name": "Chryseobacterium taklimakanense", "infraspecific_name": "strain=NCTC13490", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/15", "asm_name": "50618_E01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900187185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/187/185/GCF_900187185.1_50618_E01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2764880", "genome_size_ungapped": "2764880", "gc_percent": "40.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900187185.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2644", "protein_coding_gene_count": "2579", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-15", "dateModified": "2017-08-15", "datePublished": "2017-08-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium taklimakanense" ], "sample_taxid": [ "536441" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.777 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2764880", "Number of Sequences": "1", "Longest Sequences (bp)": "2764880", "N50 (bp)": "2764880", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.4", "Number of CDSs": "2563", "Average Protein Length": "317.9", "Coding Ratio (%)": "88.4", "Number of rRNAs": "6", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium taklimakanense", "strain": "strain=NCTC13490", "accession": "GCA_900187185.1", "taxid": 536441, "species_taxid": 536441, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 921, "total_fragments": 921, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chryseobacterium camelliae", "strain": "strain=Dolsongi-HT1", "accession": "GCA_002770595.1", "taxid": 1265445, "species_taxid": 1265445, "relation_to_type": "type", "validated": true, "ani": 78.9215, "matched_fragments": 153, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium lacus", "strain": "strain=YLOS41", "accession": "GCA_003336205.1", "taxid": 2058346, "species_taxid": 2058346, "relation_to_type": "type", "validated": true, "ani": 78.5048, "matched_fragments": 179, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium lacus", "strain": "strain=YLOS41", "accession": "GCA_003984675.1", "taxid": 2058346, "species_taxid": 2058346, "relation_to_type": "type", "validated": true, "ani": 78.4968, "matched_fragments": 180, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium taihuense", "strain": "strain=CGMCC 1.10941", "accession": "GCA_900103755.1", "taxid": 1141221, "species_taxid": 1141221, "relation_to_type": "type", "validated": true, "ani": 78.2495, "matched_fragments": 153, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium binzhouense", "strain": "strain=LM2", "accession": "GCA_007474545.1", "taxid": 2593646, "species_taxid": 2593646, "relation_to_type": "type", "validated": true, "ani": 77.8847, "matched_fragments": 147, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 77.6923, "matched_fragments": 138, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella treverensis", "strain": "strain=DSM 22251", "accession": "GCA_900114045.1", "taxid": 631455, "species_taxid": 631455, "relation_to_type": "type", "validated": true, "ani": 77.4845, "matched_fragments": 191, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella daneshvariae", "strain": "strain=H3001", "accession": "GCA_003860505.1", "taxid": 2487074, "species_taxid": 2487074, "relation_to_type": "type", "validated": true, "ani": 77.4472, "matched_fragments": 171, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium faecale", "strain": "strain=F4", "accession": "GCA_019195395.1", "taxid": 2852098, "species_taxid": 2852098, "relation_to_type": "type", "validated": true, "ani": 77.3175, "matched_fragments": 198, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium faecale", "strain": "strain=F4", "accession": "GCA_020985365.1", "taxid": 2852098, "species_taxid": 2852098, "relation_to_type": "type", "validated": true, "ani": 77.3099, "matched_fragments": 198, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium glaciei", "strain": "strain=IHBB 10212", "accession": "GCA_001648155.1", "taxid": 1685010, "species_taxid": 1685010, "relation_to_type": "type", "validated": true, "ani": 77.2544, "matched_fragments": 148, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium formosense", "strain": "strain=DSM 17452", "accession": "GCA_900116415.1", "taxid": 236814, "species_taxid": 236814, "relation_to_type": "type", "validated": true, "ani": 77.2338, "matched_fragments": 165, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella jeonii", "strain": "strain=NCTC13459", "accession": "GCA_900638245.1", "taxid": 266749, "species_taxid": 266749, "relation_to_type": "type", "validated": true, "ani": 77.1723, "matched_fragments": 142, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella jeonii", "strain": "strain=DSM 17048", "accession": "GCA_000812865.1", "taxid": 266749, "species_taxid": 266749, "relation_to_type": "type", "validated": true, "ani": 77.1066, "matched_fragments": 136, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium scophthalmum", "strain": "strain=DSM 16779", "accession": "GCA_900143185.1", "taxid": 59733, "species_taxid": 59733, "relation_to_type": "type", "validated": true, "ani": 77.0961, "matched_fragments": 168, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Epilithonimonas tenax", "strain": "strain=DSM 16811", "accession": "GCA_000428485.1", "taxid": 191577, "species_taxid": 191577, "relation_to_type": "type", "validated": true, "ani": 77.047, "matched_fragments": 119, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium aquaticum", "strain": "strain=KCTC 12483", "accession": "GCA_001420285.1", "taxid": 452084, "species_taxid": 452084, "relation_to_type": "type", "validated": true, "ani": 76.9973, "matched_fragments": 146, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium endalhagicum", "strain": "strain=L7", "accession": "GCA_016745235.1", "taxid": 2797638, "species_taxid": 2797638, "relation_to_type": "type", "validated": true, "ani": 76.9557, "matched_fragments": 165, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 76.9527, "matched_fragments": 131, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium artocarpi", "strain": "strain=UTM-3", "accession": "GCA_001684975.1", "taxid": 1414727, "species_taxid": 1414727, "relation_to_type": "type", "validated": true, "ani": 76.9416, "matched_fragments": 138, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium soldanellicola", "strain": "strain=DSM 17072", "accession": "GCA_900100115.1", "taxid": 311333, "species_taxid": 311333, "relation_to_type": "type", "validated": true, "ani": 76.9056, "matched_fragments": 162, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900187185.1", "gtdb_species": "s__Planobacterium taklimakanense", "ani": 100.0, "matched_fragments": 921, "total_fragments": 921, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Planobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.53", "min_intra_species_ani": "96.28", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_008831505.1", "gtdb_species": "s__Planobacterium sp008831505", "ani": 80.6859, "matched_fragments": 152, "total_fragments": 921, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Planobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002453895.1", "gtdb_species": "s__Kaistella sp002453895", "ani": 79.4203, "matched_fragments": 222, "total_fragments": 921, "gtdb_taxonomy": 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Planobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.17", "min_intra_species_ani": "96.96", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_002345565.1", "gtdb_species": "s__Epilithonimonas sp002345565", "ani": 78.2763, "matched_fragments": 127, "total_fragments": 921, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Epilithonimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900103755.1", "gtdb_species": "s__Chryseobacterium taihuense", "ani": 78.2495, "matched_fragments": 153, "total_fragments": 921, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.40", "min_intra_species_ani": "97.39", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002484105.1", "gtdb_species": "s__Bergeyella_A sp002484105", "ani": 78.071, "matched_fragments": 150, "total_fragments": 921, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Bergeyella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.04", "min_intra_species_ani": "99.04", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007474545.1", "gtdb_species": "s__Chryseobacterium binzhouense", "ani": 77.8847, "matched_fragments": 147, "total_fragments": 921, "gtdb_taxonomy": 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