{ "type": "genome", "identifier": "GCF_900187375.1", "organism": "Hymenobacter gelipurpurascens", "title": "Hymenobacter gelipurpurascens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900187375.1", "bioproject": "PRJNA224116", "biosample": "SAMN06265337", "wgs_master": "FYEW00000000.1", "refseq_category": "reference genome", "taxid": "89968", "species_taxid": "89968", "organism_name": "Hymenobacter gelipurpurascens", "infraspecific_name": "strain=DSM 11116", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/06/29", "asm_name": "IMG-taxon 2728369218 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900187375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/187/375/GCF_900187375.1_IMG-taxon_2728369218_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5060948", "genome_size_ungapped": "5060617", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900187375.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4306", "protein_coding_gene_count": "4242", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-06-29", "dateModified": "2017-06-29", "datePublished": "2017-06-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter gelipurpurascens" ], "sample_taxid": [ "89968" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Alberta" ], "sample_host_location_id": [], "data_size": "1.433 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5060948", "Number of Sequences": "9", "Longest Sequences (bp)": "2778879", "N50 (bp)": "2778879", "Gap Ratio (%)": "0.006540", "GCcontent (%)": "57.0", "Number of CDSs": "4279", "Average Protein Length": "337.1", "Coding Ratio (%)": "85.5", "Number of rRNAs": "2", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter gelipurpurascens", "strain": "strain=DSM 11116", "accession": "GCA_900187375.1", "taxid": 89968, "species_taxid": 89968, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1681, "total_fragments": 1681, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Hymenobacter wooponensis", "strain": "strain=JCM 19491", "accession": "GCA_004745865.1", "taxid": 1525360, "species_taxid": 1525360, "relation_to_type": "type", "validated": true, "ani": 82.0588, "matched_fragments": 1157, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter fodinae", "strain": "strain=92R-1", "accession": "GCA_004745825.1", "taxid": 2510796, "species_taxid": 2510796, "relation_to_type": "type", "validated": true, "ani": 81.9699, "matched_fragments": 1142, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter glacieicola", "strain": "strain=CGMCC 1.12990", "accession": "GCA_014640315.1", "taxid": 1562124, "species_taxid": 1562124, "relation_to_type": "type", "validated": true, "ani": 80.8804, "matched_fragments": 952, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter psychrotolerans", "strain": "strain=DSM 18569", "accession": "GCA_900142395.1", "taxid": 344998, "species_taxid": 344998, "relation_to_type": "type", "validated": true, "ani": 80.746, "matched_fragments": 821, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter swuensis", "strain": "strain=DY53", "accession": "GCA_000576555.1", "taxid": 1446467, "species_taxid": 1446467, "relation_to_type": "type", "validated": true, "ani": 80.5461, "matched_fragments": 909, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter rigui", "strain": "strain=KCTC 12533", "accession": "GCA_003944715.1", "taxid": 334424, "species_taxid": 334424, "relation_to_type": "type", "validated": true, 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"total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter guriensis", "strain": "strain=BT594", "accession": "GCA_015773195.1", "taxid": 2793065, "species_taxid": 2793065, "relation_to_type": "type", "validated": true, "ani": 79.7516, "matched_fragments": 781, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter telluris", "strain": "strain=BT186", "accession": "GCA_017313265.1", "taxid": 2816474, "species_taxid": 2816474, "relation_to_type": "type", "validated": true, "ani": 79.6343, "matched_fragments": 805, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter mucosus", "strain": "strain=DSM 28041", "accession": "GCA_900188255.1", "taxid": 1411120, "species_taxid": 1411120, "relation_to_type": "type", "validated": true, "ani": 79.3035, "matched_fragments": 792, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallicola", "strain": "strain=9PBR-1", "accession": "GCA_004745645.1", "taxid": 2563114, "species_taxid": 2563114, "relation_to_type": "type", "validated": true, "ani": 79.2809, "matched_fragments": 786, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", "taxid": 2771358, "species_taxid": 2771358, "relation_to_type": "type", "validated": true, "ani": 78.2823, "matched_fragments": 604, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900187375.1", "gtdb_species": "s__Hymenobacter gelipurpurascens", "ani": 100.0, "matched_fragments": 1681, "total_fragments": 1681, "gtdb_taxonomy": 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