{
    "type": "genome",
    "identifier": "GCF_900187855.1",
    "organism": "Actinomyces minihominis",
    "title": "Actinomyces minihominis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "URMITE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900187855.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA104129612",
        "wgs_master": "FYEG00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2002838",
        "species_taxid": "2002838",
        "organism_name": "Actinomyces minihominis",
        "infraspecific_name": "strain=Marseille-P3850",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/10/23",
        "asm_name": "PRJEB20853",
        "asm_submitter": "URMITE",
        "gbrs_paired_asm": "GCA_900187855.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/187/855/GCF_900187855.1_PRJEB20853",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2036057",
        "genome_size_ungapped": "2036057",
        "gc_percent": "59.500000",
        "replicon_count": "0",
        "scaffold_count": "24",
        "contig_count": "24",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900187855.1-RS_2024_08_20",
        "annotation_date": "2024-08-20",
        "total_gene_count": "1865",
        "protein_coding_gene_count": "1786",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-10-23",
    "dateModified": "2017-10-23",
    "datePublished": "2017-10-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinomyces minihominis"
        ],
        "sample_taxid": [
            "2002838"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.578 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2036057",
        "Number of Sequences": "24",
        "Longest Sequences (bp)": "439918",
        "N50 (bp)": "316333",
        "Gap Ratio (%)": "0.000049",
        "GCcontent (%)": "59.7",
        "Number of CDSs": "1826",
        "Average Protein Length": "335.4",
        "Coding Ratio (%)": "90.2",
        "Number of rRNAs": "2",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Actinomyces minihominis",
                "strain": "strain=Marseille-P3850",
                "accession": "GCA_900187855.1",
                "taxid": 2002838,
                "species_taxid": 2002838,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 665,
                "total_fragments": 666,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Actinomyces polynesiensis",
                "strain": "strain=MS2",
                "accession": "GCA_000820725.1",
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                "species_taxid": 1325934,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 60,
                "total_fragments": 666,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900187855.1",
                "gtdb_species": "s__Scrofimicrobium minihominis",
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                "total_fragments": 666,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Scrofimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014069575.1",
                "gtdb_species": "s__Scrofimicrobium sp014069575",
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                "matched_fragments": 182,
                "total_fragments": 666,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Scrofimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.41",
                "min_intra_species_ani": "97.41",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_005696695.1",
                "gtdb_species": "s__Pauljensenia odontolytica_C",
                "ani": 77.1095,
                "matched_fragments": 55,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.76",
                "min_intra_species_ani": "95.52",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001838165.1",
                "gtdb_species": "s__Pauljensenia sp001838165",
                "ani": 76.9482,
                "matched_fragments": 50,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.43",
                "min_intra_species_ani": "95.77",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000820725.1",
                "gtdb_species": "s__Pauljensenia polynesiensis",
                "ani": 76.8208,
                "matched_fragments": 60,
                "total_fragments": 666,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_018986735.1",
                "gtdb_species": "s__Pauljensenia sp018986735",
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                "matched_fragments": 54,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.165,
        "cell_length": 0.258,
        "doubling_h": null,
        "growth_tmp": 36.951,
        "optimum_tmp": 36.833,
        "optimum_ph": 7.0,
        "genome_size": 2699137.843,
        "gc_content": 65.627,
        "coding_genes": 2308.7,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 49.8,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.2,
        "anaerobic_respiration": 0.428,
        "aerobic_respiration": 0.371,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.95,
        "coccus_cell_shape": 0.05,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Actinomyces",
        "minihominis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}