{
    "type": "genome",
    "identifier": "GCF_900187885.1",
    "organism": "Thermoflexus hugenholtzii JAD2",
    "title": "Thermoflexus hugenholtzii JAD2",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900187885.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02746019",
        "wgs_master": "FYEK00000000.1",
        "refseq_category": "reference genome",
        "taxid": "877466",
        "species_taxid": "1495650",
        "organism_name": "Thermoflexus hugenholtzii JAD2",
        "infraspecific_name": "strain=JAD2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/06/24",
        "asm_name": "IMG-taxon 2140918011 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900187885.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/187/885/GCF_900187885.1_IMG-taxon_2140918011_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3216964",
        "genome_size_ungapped": "3216440",
        "gc_percent": "67.500000",
        "replicon_count": "0",
        "scaffold_count": "78",
        "contig_count": "78",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900187885.1-RS_2024_12_02",
        "annotation_date": "2024-12-02",
        "total_gene_count": "2999",
        "protein_coding_gene_count": "2893",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-06-24",
    "dateModified": "2017-06-24",
    "datePublished": "2017-06-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thermoflexus hugenholtzii JAD2"
        ],
        "sample_taxid": [
            "877466"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.883 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3213720",
        "Number of Sequences": "56",
        "Longest Sequences (bp)": "405611",
        "N50 (bp)": "139933",
        "Gap Ratio (%)": "0.016305",
        "GCcontent (%)": "67.3",
        "Number of CDSs": "2900",
        "Average Protein Length": "326.3",
        "Coding Ratio (%)": "88.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Thermoflexus hugenholtzii",
                "strain": "strain=JAD2",
                "accession": "GCA_900187885.1",
                "taxid": 1495650,
                "species_taxid": 1495650,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1048,
                "total_fragments": 1050,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thermus filiformis",
                "strain": "strain=ATCC 43280",
                "accession": "GCA_000771745.2",
                "taxid": 276,
                "species_taxid": 276,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1709,
                "matched_fragments": 64,
                "total_fragments": 1050,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaeromyxobacter dehalogenans",
                "strain": "strain=2CP-1",
                "accession": "GCA_000022145.1",
                "taxid": 161493,
                "species_taxid": 161493,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.971,
                "matched_fragments": 73,
                "total_fragments": 1050,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides kongjuensis",
                "strain": "strain=DSM 19082",
                "accession": "GCA_013409625.1",
                "taxid": 349522,
                "species_taxid": 349522,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.934,
                "matched_fragments": 50,
                "total_fragments": 1050,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinoplanes regularis",
                "strain": "strain=DSM 43151",
                "accession": "GCA_900188005.1",
                "taxid": 52697,
                "species_taxid": 52697,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7867,
                "matched_fragments": 74,
                "total_fragments": 1050,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces dentalis",
                "strain": "strain=DSM 19115",
                "accession": "GCA_000429225.1",
                "taxid": 272548,
                "species_taxid": 272548,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6032,
                "matched_fragments": 55,
                "total_fragments": 1050,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900187885.1",
                "gtdb_species": "s__Thermoflexus hugenholtzii",
                "ani": 100.0,
                "matched_fragments": 1048,
                "total_fragments": 1050,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Thermoflexales;f__Thermoflexaceae;g__Thermoflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.76",
                "min_intra_species_ani": "95.14",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017743605.1",
                "gtdb_species": "s__Thermoflexus sp017743605",
                "ani": 89.5021,
                "matched_fragments": 588,
                "total_fragments": 1050,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Thermoflexales;f__Thermoflexaceae;g__Thermoflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011048055.1",
                "gtdb_species": "s__Thermoflexus sp011048055",
                "ani": 82.2984,
                "matched_fragments": 695,
                "total_fragments": 1050,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Thermoflexales;f__Thermoflexaceae;g__Thermoflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.89",
                "min_intra_species_ani": "99.88",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002898735.1",
                "gtdb_species": "s__Thermoflexus japonica",
                "ani": 81.7072,
                "matched_fragments": 634,
                "total_fragments": 1050,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Thermoflexales;f__Thermoflexaceae;g__Thermoflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016842085.1",
                "gtdb_species": "s__Thermoflexus tengchongensis",
                "ani": 81.6601,
                "matched_fragments": 715,
                "total_fragments": 1050,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Thermoflexales;f__Thermoflexaceae;g__Thermoflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011373175.1",
                "gtdb_species": "s__Thermoflexus sinensis",
                "ani": 80.5555,
                "matched_fragments": 449,
                "total_fragments": 1050,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Thermoflexales;f__Thermoflexaceae;g__Thermoflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.75",
                "min_intra_species_ani": "98.51",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_014360895.1",
                "gtdb_species": "s__SpSt-77 sp014360895",
                "ani": 75.8555,
                "matched_fragments": 70,
                "total_fragments": 1050,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__B4-G1;f__DUEL01;g__SpSt-77",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Thermoflexus",
        "hugenholtzii",
        "JAD2"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}