{ "type": "genome", "identifier": "GCF_900188045.1", "organism": "Jannaschia aquimarina", "title": "Jannaschia aquimarina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900188045.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421775", "wgs_master": "FZPF00000000.1", "refseq_category": "reference genome", "taxid": "935700", "species_taxid": "935700", "organism_name": "Jannaschia aquimarina", "infraspecific_name": "strain=DSM 28248", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/07/16", "asm_name": "IMG-taxon 2681813552 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900188045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/188/045/GCF_900188045.1_IMG-taxon_2681813552_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4117706", "genome_size_ungapped": "4117348", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "37", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900188045.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "4106", "protein_coding_gene_count": "4016", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-07-16", "dateModified": "2017-07-16", "datePublished": "2017-07-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Jannaschia aquimarina" ], "sample_taxid": [ "935700" ], 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2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 77.4936, "matched_fragments": 249, "total_fragments": 1352, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus contaminans", "strain": "strain=RKI 16-01929T=LMG 29738T=CCM 8701T=CIP 111112T", "accession": "GCA_002105555.1", "taxid": 1945662, "species_taxid": 1945662, "relation_to_type": "type", "validated": true, "ani": 77.1502, "matched_fragments": 217, "total_fragments": 1352, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter ovatus", "strain": "strain=JA234", "accession": "GCA_900207575.1", "taxid": 439529, "species_taxid": 439529, "relation_to_type": "type", "validated": true, "ani": 77.0627, "matched_fragments": 240, "total_fragments": 1352, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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