{
    "type": "genome",
    "identifier": "GCF_900188105.1",
    "organism": "Actinomadura mexicana",
    "title": "Actinomadura mexicana",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900188105.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06265355",
        "wgs_master": "FZNP00000000.1",
        "refseq_category": "reference genome",
        "taxid": "134959",
        "species_taxid": "134959",
        "organism_name": "Actinomadura mexicana",
        "infraspecific_name": "strain=DSM 44485",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/07/16",
        "asm_name": "IMG-taxon 2724679706 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900188105.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/188/105/GCF_900188105.1_IMG-taxon_2724679706_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8786361",
        "genome_size_ungapped": "8786361",
        "gc_percent": "72.500000",
        "replicon_count": "0",
        "scaffold_count": "53",
        "contig_count": "53",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900188105.1-RS_2024_05_03",
        "annotation_date": "2024-05-03",
        "total_gene_count": "8094",
        "protein_coding_gene_count": "7922",
        "non_coding_gene_count": "72",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-07-16",
    "dateModified": "2017-07-16",
    "datePublished": "2017-07-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinomadura mexicana"
        ],
        "sample_taxid": [
            "134959"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Mexico"
        ],
        "sample_host_location_id": [],
        "data_size": "2.346 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.07,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8786361",
        "Number of Sequences": "53",
        "Longest Sequences (bp)": "1005176",
        "N50 (bp)": "464425",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "72.3",
        "Number of CDSs": "8184",
        "Average Protein Length": "318.3",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "89",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Actinomadura mexicana",
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                "accession": "GCA_900188105.1",
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                "species_taxid": 134959,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2899,
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                "status": "conclusive"
            },
            {
                "organism_name": "Actinomadura citrea",
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                "taxid": 46158,
                "species_taxid": 46158,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.9113,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Actinomadura citrea",
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                "status": "below_threshold"
            },
            {
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                "accession": "GCA_014648535.1",
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                "species_taxid": 46159,
                "relation_to_type": "type",
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                "matched_fragments": 2248,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Actinomadura coerulea",
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                "species_taxid": 46159,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.5716,
                "matched_fragments": 2287,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura violacea",
                "strain": "strain=LCR2-06",
                "accession": "GCA_017573465.1",
                "taxid": 2819934,
                "species_taxid": 2819934,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura spongiicola",
                "strain": "strain=LHW52907",
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                "taxid": 2303421,
                "species_taxid": 2303421,
                "relation_to_type": "type",
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                "ani": 84.3249,
                "matched_fragments": 1537,
                "total_fragments": 2903,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura graeca",
                "strain": "strain=32-07",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura parmotrematis",
                "strain": "strain=PM05-2",
                "accession": "GCA_019458805.1",
                "taxid": 2864039,
                "species_taxid": 2864039,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.652,
                "matched_fragments": 1502,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura rupiterrae",
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                "accession": "GCA_024172125.1",
                "taxid": 559627,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0946,
                "matched_fragments": 1505,
                "total_fragments": 2903,
                "ani_threshold": 95,
                "status": "below_threshold"
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        ],
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            "contamination": 8.33,
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        "gtdb_result": [
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                "accession": "GCF_900188105.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_013409045.1",
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            },
            {
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": 0.301,
        "cell_length": null,
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        "bacillus_cell_shape": 0.666,
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        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "mexicana"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}