{ "type": "genome", "identifier": "GCF_900188145.1", "organism": "Anaerovirgula multivorans", "title": "Anaerovirgula multivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900188145.1", "bioproject": "PRJNA224116", "biosample": "SAMN05446037", "wgs_master": "FZOJ00000000.1", "refseq_category": "reference genome", "taxid": "312168", "species_taxid": "312168", "organism_name": "Anaerovirgula multivorans", "infraspecific_name": "strain=SCA", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/07/16", "asm_name": "IMG-taxon 2706794911 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900188145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/188/145/GCF_900188145.1_IMG-taxon_2706794911_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5388996", "genome_size_ungapped": "5388848", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "105", "contig_count": "105", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900188145.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "5284", "protein_coding_gene_count": "5122", "non_coding_gene_count": "92", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-07-16", "dateModified": "2017-07-16", "datePublished": "2017-07-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Anaerovirgula multivorans" ], "sample_taxid": [ "312168" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.511 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5388996", "Number of Sequences": "105", "Longest Sequences (bp)": "386564", "N50 (bp)": "140740", "Gap Ratio (%)": "0.002746", "GCcontent (%)": "34.9", "Number of CDSs": "5188", "Average Protein Length": "289.2", "Coding Ratio (%)": "83.5", "Number of rRNAs": "1", "Number of tRNAs": "78", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Anaerovirgula multivorans", "strain": "strain=SCA", "accession": "GCA_900188145.1", "taxid": 312168, "species_taxid": 312168, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1735, "total_fragments": 1739, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Clostridium formicaceticum", "strain": "strain=ATCC 27076", "accession": "GCA_001854185.1", "taxid": 1497, "species_taxid": 1497, "relation_to_type": "type", "validated": true, "ani": 78.6751, "matched_fragments": 441, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium formicaceticum", "strain": "strain=DSM 92", "accession": "GCA_002080475.1", "taxid": 1497, "species_taxid": 1497, "relation_to_type": "type", "validated": true, "ani": 78.5912, "matched_fragments": 438, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium aceticum", "strain": "strain=DSM 1496", "accession": "GCA_001042715.1", "taxid": 84022, "species_taxid": 84022, "relation_to_type": "type", "validated": true, "ani": 78.4517, "matched_fragments": 374, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium aceticum", "strain": "strain=DSM 1496", "accession": "GCA_000949285.1", "taxid": 84022, "species_taxid": 84022, "relation_to_type": "type", "validated": true, "ani": 78.4408, "matched_fragments": 365, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronincola peptidivorans", "strain": "strain=DSM 18979", "accession": "GCA_900111615.1", "taxid": 426128, "species_taxid": 426128, "relation_to_type": "type", "validated": true, "ani": 78.2826, "matched_fragments": 405, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alkaliphilus transvaalensis", "strain": "strain=ATCC 700919", "accession": "GCA_000621485.1", "taxid": 114628, "species_taxid": 114628, "relation_to_type": "type", "validated": true, "ani": 77.0184, "matched_fragments": 129, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alkaliphilus hydrothermalis", "strain": "strain=DSM 25890", "accession": "GCA_016908555.1", "taxid": 1482730, "species_taxid": 1482730, "relation_to_type": "type", "validated": true, "ani": 76.5206, "matched_fragments": 82, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crassaminicella profunda", "strain": "strain=Ra1766H", "accession": "GCA_019884785.1", "taxid": 1286698, "species_taxid": 1286698, "relation_to_type": "type", "validated": true, "ani": 76.3403, "matched_fragments": 92, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium felsineum", "strain": "strain=DSM 794", "accession": "GCA_002006355.2", "taxid": 36839, "species_taxid": 36839, "relation_to_type": "type", "validated": true, "ani": 75.2305, "matched_fragments": 50, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900188145.1", "gtdb_species": "s__Anaerovirgula multivorans", "ani": 100.0, "matched_fragments": 1735, "total_fragments": 1739, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__Anaerovirgula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001854185.1", "gtdb_species": "s__Clostridium_W formicaceticum", "ani": 78.7059, "matched_fragments": 436, "total_fragments": 1739, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__Clostridium_W", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001042715.1", "gtdb_species": "s__Clostridium_W aceticum", "ani": 78.4557, "matched_fragments": 373, "total_fragments": 1739, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__Clostridium_W", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900111615.1", "gtdb_species": "s__Natronincola_A peptidivorans", "ani": 78.2779, "matched_fragments": 406, "total_fragments": 1739, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__Natronincola_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900100845.1", "gtdb_species": "s__Natronincola ferrireducens", "ani": 78.1805, "matched_fragments": 313, "total_fragments": 1739, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__Natronincola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000621485.1", "gtdb_species": "s__Alkaliphilus transvaalensis", "ani": 77.0038, "matched_fragments": 129, "total_fragments": 1739, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__Alkaliphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016908435.1", "gtdb_species": "s__Alkaliphilus_B halophilus", "ani": 76.6571, "matched_fragments": 90, "total_fragments": 1739, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__Alkaliphilus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012521085.1", "gtdb_species": "s__JAAYNB01 sp012521085", "ani": 76.592, "matched_fragments": 101, "total_fragments": 1739, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__JAAYNB01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016908555.1", "gtdb_species": "s__Alkaliphilus hydrothermalis", "ani": 76.5144, "matched_fragments": 81, "total_fragments": 1739, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__Alkaliphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015686845.1", "gtdb_species": "s__JADPRS01 sp015686845", "ani": 76.1907, "matched_fragments": 59, "total_fragments": 1739, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Thermotaleaceae;g__JADPRS01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019203185.1", "gtdb_species": "s__143-21 sp019203185", "ani": 76.159, "matched_fragments": 67, "total_fragments": 1739, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Thermotaleaceae;g__143-21", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015978205.1", "gtdb_species": "s__Alkaliphilus_B sp015978205", "ani": 76.1255, "matched_fragments": 103, "total_fragments": 1739, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__Alkaliphilus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009711765.1", "gtdb_species": "s__MES13 sp009711765", "ani": 75.2754, "matched_fragments": 58, "total_fragments": 1739, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__MES13;g__MES13", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 35.0, "optimum_tmp": null, "optimum_ph": null, "genome_size": 5388996.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Anaerovirgula", "multivorans" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }