{
    "type": "genome",
    "identifier": "GCF_900188225.1",
    "organism": "Humidesulfovibrio mexicanus",
    "title": "Humidesulfovibrio mexicanus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900188225.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04488503",
        "wgs_master": "FZOC00000000.1",
        "refseq_category": "reference genome",
        "taxid": "147047",
        "species_taxid": "147047",
        "organism_name": "Humidesulfovibrio mexicanus",
        "infraspecific_name": "strain=DSM 13116",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/07/16",
        "asm_name": "IMG-taxon 2622736540 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900188225.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/188/225/GCF_900188225.1_IMG-taxon_2622736540_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3535439",
        "genome_size_ungapped": "3530993",
        "gc_percent": "65.500000",
        "replicon_count": "0",
        "scaffold_count": "15",
        "contig_count": "15",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900188225.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "3325",
        "protein_coding_gene_count": "3238",
        "non_coding_gene_count": "68",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-07-16",
    "dateModified": "2017-07-16",
    "datePublished": "2017-07-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Humidesulfovibrio mexicanus"
        ],
        "sample_taxid": [
            "147047"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.973 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3535439",
        "Number of Sequences": "15",
        "Longest Sequences (bp)": "807066",
        "N50 (bp)": "496652",
        "Gap Ratio (%)": "0.125755",
        "GCcontent (%)": "65.7",
        "Number of CDSs": "3269",
        "Average Protein Length": "328.3",
        "Coding Ratio (%)": "91.1",
        "Number of rRNAs": "6",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Fundidesulfovibrio putealis",
                "strain": "strain=DSM 16056",
                "accession": "GCA_000429325.1",
                "taxid": 270496,
                "species_taxid": 270496,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0333,
                "matched_fragments": 273,
                "total_fragments": 1171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paucidesulfovibrio longus",
                "strain": "strain=DSM 6739",
                "accession": "GCA_000420485.1",
                "taxid": 889,
                "species_taxid": 889,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0268,
                "matched_fragments": 305,
                "total_fragments": 1171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudodesulfovibrio indicus",
                "strain": "strain=J2",
                "accession": "GCA_001563225.1",
                "taxid": 1716143,
                "species_taxid": 1716143,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8227,
                "matched_fragments": 313,
                "total_fragments": 1171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudodesulfovibrio mercurii",
                "strain": "strain=ND132",
                "accession": "GCA_000189295.2",
                "taxid": 641491,
                "species_taxid": 641491,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8076,
                "matched_fragments": 353,
                "total_fragments": 1171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudodesulfovibrio aespoeensis",
                "strain": "strain=Aspo-2",
                "accession": "GCA_000176915.2",
                "taxid": 182210,
                "species_taxid": 182210,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7706,
                "matched_fragments": 269,
                "total_fragments": 1171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudodesulfovibrio hydrargyri",
                "strain": "strain=BerOc1",
                "accession": "GCA_001874525.1",
                "taxid": 2125990,
                "species_taxid": 2125990,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7667,
                "matched_fragments": 313,
                "total_fragments": 1171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudodesulfovibrio indicus",
                "strain": "strain=DSM 101483",
                "accession": "GCA_004365595.1",
                "taxid": 1716143,
                "species_taxid": 1716143,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7533,
                "matched_fragments": 309,
                "total_fragments": 1171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fundidesulfovibrio magnetotacticus",
                "strain": "strain=FSS-1",
                "accession": "GCA_013019105.1",
                "taxid": 2730080,
                "species_taxid": 2730080,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7454,
                "matched_fragments": 337,
                "total_fragments": 1171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudodesulfovibrio tunisiensis",
                "strain": "strain=RB22",
                "accession": "GCA_022809775.1",
                "taxid": 463192,
                "species_taxid": 463192,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4248,
                "matched_fragments": 190,
                "total_fragments": 1171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudodesulfovibrio alkaliphilus",
                "strain": "strain=F-1",
                "accession": "GCA_009729555.1",
                "taxid": 2661613,
                "species_taxid": 2661613,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3727,
                "matched_fragments": 222,
                "total_fragments": 1171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Solidesulfovibrio alcoholivorans",
                "strain": "strain=DSM 5433",
                "accession": "GCA_000702665.1",
                "taxid": 81406,
                "species_taxid": 81406,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2241,
                "matched_fragments": 290,
                "total_fragments": 1171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudodesulfovibrio cashew",
                "strain": "strain=SRB007",
                "accession": "GCA_009762795.1",
                "taxid": 2678688,
                "species_taxid": 2678688,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2064,
                "matched_fragments": 233,
                "total_fragments": 1171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Solidesulfovibrio carbinolicus",
                "strain": "strain=DSM 3852",
                "accession": "GCA_004135975.1",
                "taxid": 296842,
                "species_taxid": 296842,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1736,
                "matched_fragments": 259,
                "total_fragments": 1171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfocurvibacter africanus subsp. africanus",
                "strain": "strain=DSM 2603",
                "accession": "GCA_000422545.1",
                "taxid": 1511600,
                "species_taxid": 873,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1732,
                "matched_fragments": 233,
                "total_fragments": 1171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfovibrio carbinoliphilus subsp. oakridgensis",
                "strain": "strain=FW-101-2B",
                "accession": "GCA_000177215.2",
                "taxid": 694327,
                "species_taxid": 345370,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.168,
                "matched_fragments": 241,
                "total_fragments": 1171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfovibrio piger",
                "strain": "strain=ATCC 29098",
                "accession": "GCA_000156375.1",
                "taxid": 901,
                "species_taxid": 901,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.0138,
                "matched_fragments": 145,
                "total_fragments": 1171,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900188225.1",
                "gtdb_species": "s__Humidesulfovibrio mexicanus",
                "ani": 100.0,
                "matched_fragments": 1168,
                "total_fragments": 1171,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Humidesulfovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_016218665.1",
                "gtdb_species": "s__Humidesulfovibrio sp016218665",
                "ani": 84.8215,
                "matched_fragments": 670,
                "total_fragments": 1171,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Humidesulfovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002422505.1",
                "gtdb_species": "s__Humidesulfovibrio sp002422505",
                "ani": 83.345,
                "matched_fragments": 698,
                "total_fragments": 1171,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Humidesulfovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001871085.1",
                "gtdb_species": "s__Humidesulfovibrio sp001871085",
                "ani": 82.3711,
                "matched_fragments": 607,
                "total_fragments": 1171,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Humidesulfovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018822105.1",
                "gtdb_species": "s__Humidesulfovibrio sp018822105",
                "ani": 82.1449,
                "matched_fragments": 669,
                "total_fragments": 1171,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Humidesulfovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903843965.1",
                "gtdb_species": "s__Humidesulfovibrio sp903843965",
                "ani": 82.0802,
                "matched_fragments": 662,
                "total_fragments": 1171,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Humidesulfovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.89",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCA_002840405.1",
                "gtdb_species": "s__Humidesulfovibrio sp002840405",
                "ani": 81.963,
                "matched_fragments": 692,
                "total_fragments": 1171,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Humidesulfovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018817515.1",
                "gtdb_species": "s__Humidesulfovibrio sp018817515",
                "ani": 81.9492,
                "matched_fragments": 654,
                "total_fragments": 1171,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Humidesulfovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Humidesulfovibrio",
        "mexicanus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}