{ "type": "genome", "identifier": "GCF_900188335.1", "organism": "Tropicimonas sediminicola", "title": "Tropicimonas sediminicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900188335.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421757", "wgs_master": "FZOY00000000.1", "refseq_category": "reference genome", "taxid": "1031541", "species_taxid": "1031541", "organism_name": "Tropicimonas sediminicola", "infraspecific_name": "strain=DSM 29339", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/07/16", "asm_name": "IMG-taxon 2681813518 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900188335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/188/335/GCF_900188335.1_IMG-taxon_2681813518_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5174220", "genome_size_ungapped": "5174220", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900188335.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "4873", "protein_coding_gene_count": "4794", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-07-16", "dateModified": "2017-07-16", "datePublished": "2017-07-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Tropicimonas sediminicola" ], "sample_taxid": [ "1031541" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.422 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5174220", "Number of Sequences": "32", "Longest Sequences (bp)": "914591", "N50 (bp)": "500863", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.4", "Number of CDSs": "4864", "Average Protein Length": "316.7", "Coding Ratio (%)": "89.3", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aliiruegeria lutimaris", "strain": "strain=DSM 25294", "accession": "GCA_900099935.1", "taxid": 571298, "species_taxid": 571298, "relation_to_type": "type", "validated": true, "ani": 80.73, "matched_fragments": 807, "total_fragments": 1707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiruegeria sabulilitoris", "strain": "strain=GJMS-35", "accession": "GCA_001558155.1", "taxid": 1510458, "species_taxid": 1510458, "relation_to_type": "type", "validated": true, "ani": 80.6709, "matched_fragments": 807, "total_fragments": 1707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tropicimonas isoalkanivorans", "strain": "strain=DSM 19548", "accession": "GCA_900112335.1", "taxid": 441112, "species_taxid": 441112, "relation_to_type": "type", "validated": true, "ani": 80.3685, "matched_fragments": 727, "total_fragments": 1707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiruegeria haliotis", "strain": "strain=DSM 29328", "accession": "GCA_003003255.1", "taxid": 1280846, "species_taxid": 1280846, 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