{ "type": "genome", "identifier": "GCF_900188405.1", "organism": "Actinacidiphila glaucinigra", "title": "Actinacidiphila glaucinigra", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900188405.1", "bioproject": "PRJNA224116", "biosample": "SAMN05216252", "wgs_master": "FZOF00000000.1", "refseq_category": "na", "taxid": "235986", "species_taxid": "235986", "organism_name": "Actinacidiphila glaucinigra", "infraspecific_name": "strain=CGMCC 4.1858", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/07/16", "asm_name": "IMG-taxon 2671180020 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900188405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/188/405/GCF_900188405.1_IMG-taxon_2671180020_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9808662", "genome_size_ungapped": "9804476", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "81", "contig_count": "81", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900188405.1-RS_2025_01_02", "annotation_date": "2025-01-02", "total_gene_count": "8793", "protein_coding_gene_count": "8547", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-07-16", "dateModified": "2017-07-16", "datePublished": "2017-07-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinacidiphila glaucinigra" ], "sample_taxid": [ "235986" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.623 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 3.12, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9808662", "Number of Sequences": "81", "Longest Sequences (bp)": "863434", "N50 (bp)": "221920", "Gap Ratio (%)": "0.042677", "GCcontent (%)": "72.3", "Number of CDSs": "8850", "Average Protein Length": "320.4", "Coding Ratio (%)": "86.7", "Number of rRNAs": "5", "Number of tRNAs": "98", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinacidiphila glaucinigra", "strain": "strain=CGMCC 4.1858", "accession": 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