{ "type": "genome", "identifier": "GCF_900188485.1", "organism": "Asanoa hainanensis", "title": "Asanoa hainanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900188485.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421812", "wgs_master": "FZPH00000000.1", "refseq_category": "reference genome", "taxid": "560556", "species_taxid": "560556", "organism_name": "Asanoa hainanensis", "infraspecific_name": "strain=CGMCC 4.5593", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/07/16", "asm_name": "IMG-taxon 2675903059 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900188485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/188/485/GCF_900188485.1_IMG-taxon_2675903059_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8644972", "genome_size_ungapped": "8640990", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "44", "contig_count": "44", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900188485.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "8204", "protein_coding_gene_count": "7995", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-07-16", "dateModified": "2017-07-16", "datePublished": "2017-07-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Asanoa hainanensis" ], "sample_taxid": [ "560556" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hainan Province,Wenchang" ], "sample_host_location_id": [], "data_size": "2.315 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8644972", "Number of Sequences": "44", "Longest Sequences (bp)": "808383", "N50 (bp)": "337587", "Gap Ratio (%)": "0.046061", "GCcontent (%)": "71.2", "Number of CDSs": "8205", "Average Protein Length": "322.6", "Coding Ratio (%)": "91.8", "Number of rRNAs": "4", "Number of tRNAs": "86", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Asanoa hainanensis", "strain": "strain=CGMCC 4.5593", "accession": "GCA_900188485.1", "taxid": 560556, "species_taxid": 560556, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2857, "total_fragments": 2861, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Asanoa ishikariensis", "strain": "strain=NBRC 14551", "accession": "GCA_016862535.1", "taxid": 137265, "species_taxid": 137265, "relation_to_type": "type", "validated": true, "ani": 91.4769, "matched_fragments": 2398, "total_fragments": 2861, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asanoa ishikariensis", "strain": "strain=DSM 44718", "accession": "GCA_900107455.1", "taxid": 137265, "species_taxid": 137265, "relation_to_type": "type", "validated": true, "ani": 91.4739, "matched_fragments": 2390, "total_fragments": 2861, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asanoa siamensis", "strain": "strain=NBRC 107932", "accession": "GCA_016862555.1", "taxid": 926357, "species_taxid": 926357, "relation_to_type": "type", "validated": true, "ani": 86.8645, "matched_fragments": 2074, "total_fragments": 2861, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asanoa iriomotensis", "strain": "strain=NBRC 100142", "accession": "GCA_016862515.1", "taxid": 234613, "species_taxid": 234613, "relation_to_type": "type", "validated": true, "ani": 86.6844, "matched_fragments": 2010, "total_fragments": 2861, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asanoa ferruginea", "strain": "strain=DSM 44099", "accession": "GCA_003387075.1", "taxid": 53367, "species_taxid": 53367, "relation_to_type": "type", "validated": true, "ani": 85.9268, "matched_fragments": 2103, "total_fragments": 2861, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900188485.1", "gtdb_species": "s__Asanoa hainanensis", "ani": 100.0, "matched_fragments": 2857, "total_fragments": 2861, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Asanoa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900107455.1", "gtdb_species": "s__Asanoa ishikariensis", "ani": 91.4503, "matched_fragments": 2395, "total_fragments": 2861, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Asanoa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_016862555.1", "gtdb_species": "s__Asanoa siamensis", "ani": 86.903, "matched_fragments": 2067, "total_fragments": 2861, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Asanoa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016862515.1", "gtdb_species": "s__Asanoa iriomotensis", "ani": 86.6641, "matched_fragments": 2014, "total_fragments": 2861, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Asanoa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003387075.1", "gtdb_species": "s__Asanoa ferruginea", "ani": 85.9518, "matched_fragments": 2098, "total_fragments": 2861, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Asanoa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_011764445.1", "gtdb_species": "s__Phytohabitans rumicis", "ani": 78.9902, "matched_fragments": 1330, "total_fragments": 2861, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Phytohabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 26.25, "optimum_ph": 9.0, "genome_size": 8644972.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Asanoa", "hainanensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }