{
    "type": "genome",
    "identifier": "GCF_900195285.2",
    "organism": "Pectobacterium parvum",
    "title": "Pectobacterium parvum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "UNIVERSITY OF HELSINKI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900195285.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA104138801",
        "wgs_master": "OANP00000000.3",
        "refseq_category": "na",
        "taxid": "2778550",
        "species_taxid": "2778550",
        "organism_name": "Pectobacterium parvum",
        "infraspecific_name": "strain=s0421",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/09/12",
        "asm_name": "Pc0421_3",
        "asm_submitter": "UNIVERSITY OF HELSINKI",
        "gbrs_paired_asm": "GCA_900195285.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/195/285/GCF_900195285.2_Pc0421_3",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4699443",
        "genome_size_ungapped": "4699443",
        "gc_percent": "51.000000",
        "replicon_count": "0",
        "scaffold_count": "70",
        "contig_count": "70",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900195285.2-RS_2024_10_16",
        "annotation_date": "2024-10-16",
        "total_gene_count": "4335",
        "protein_coding_gene_count": "4075",
        "non_coding_gene_count": "96",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-09-12",
    "dateModified": "2019-09-12",
    "datePublished": "2019-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pectobacterium parvum"
        ],
        "sample_taxid": [
            "2778550"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Finland"
        ],
        "sample_host_location_id": [],
        "data_size": "1.339 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4699443",
        "Number of Sequences": "70",
        "Longest Sequences (bp)": "504645",
        "N50 (bp)": "181754",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "51.0",
        "Number of CDSs": "4203",
        "Average Protein Length": "312.7",
        "Coding Ratio (%)": "83.9",
        "Number of rRNAs": "11",
        "Number of tRNAs": "70",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Pectobacterium parvum",
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                "accession": "GCA_900195285.2",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1530,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pectobacterium polaris",
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                "accession": "GCA_002307355.1",
                "taxid": 2042057,
                "species_taxid": 2042057,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.0184,
                "matched_fragments": 1305,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pectobacterium versatile",
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                "accession": "GCA_004296685.1",
                "taxid": 2488639,
                "species_taxid": 2488639,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium carotovorum",
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                "accession": "GCA_900129615.1",
                "taxid": 554,
                "species_taxid": 554,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.5126,
                "matched_fragments": 1251,
                "total_fragments": 1533,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium carotovorum subsp. carotovorum",
                "strain": "strain=ICMP 5702",
                "accession": "GCA_001039055.1",
                "taxid": 555,
                "species_taxid": 554,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 93.4919,
                "matched_fragments": 1281,
                "total_fragments": 1533,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium carotovorum subsp. carotovorum",
                "strain": "strain=NCPPB 312",
                "accession": "GCA_000749855.1",
                "taxid": 555,
                "species_taxid": 554,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 93.4655,
                "matched_fragments": 1263,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium brasiliense",
                "strain": "strain=LMG 21371",
                "accession": "GCA_000754695.1",
                "taxid": 180957,
                "species_taxid": 180957,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.457,
                "matched_fragments": 1272,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium brasiliense",
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                "accession": "GCA_016950255.1",
                "taxid": 180957,
                "species_taxid": 180957,
                "relation_to_type": "type",
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                "ani": 93.4499,
                "matched_fragments": 1278,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium aquaticum",
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                "accession": "GCA_003382565.3",
                "taxid": 2204145,
                "species_taxid": 2204145,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.1427,
                "matched_fragments": 1160,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium quasiaquaticum",
                "strain": "strain=A477-S1-J17",
                "accession": "GCA_014946775.2",
                "taxid": 2774015,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 93.1162,
                "matched_fragments": 1160,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium colocasium",
                "strain": "strain=LJ1",
                "accession": "GCA_020181655.1",
                "taxid": 2878098,
                "species_taxid": 2878098,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.2383,
                "matched_fragments": 1247,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium peruviense",
                "strain": "strain=IFB5232",
                "accession": "GCA_002847345.1",
                "taxid": 2066479,
                "species_taxid": 2066479,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.6776,
                "matched_fragments": 1242,
                "total_fragments": 1533,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter hormaechei",
                "strain": "strain=FDAARGOS 1433",
                "accession": "GCA_019048245.1",
                "taxid": 158836,
                "species_taxid": 158836,
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                "ani": 78.6253,
                "matched_fragments": 350,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter roggenkampii",
                "strain": "strain=DSM 16690",
                "accession": "GCA_024390995.1",
                "taxid": 1812935,
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                "relation_to_type": "type",
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                "matched_fragments": 367,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter cloacae",
                "strain": "strain=DSM 30054",
                "accession": "GCA_021469225.1",
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                "relation_to_type": "type",
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                "ani": 78.3455,
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            }
        ],
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                "accession": "GCF_002307355.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pectobacterium",
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            },
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}