{ "type": "genome", "identifier": "GCF_900199185.1", "organism": "Sphingomonas guangdongensis", "title": "Sphingomonas guangdongensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900199185.1", "bioproject": "PRJNA224116", "biosample": "SAMN06297144", "wgs_master": "OBMI00000000.1", "refseq_category": "reference genome", "taxid": "1141890", "species_taxid": "1141890", "organism_name": "Sphingomonas guangdongensis", "infraspecific_name": "strain=CGMCC 1.12672", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/28", "asm_name": "IMG-taxon 2718218511 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900199185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/199/185/GCF_900199185.1_IMG-taxon_2718218511_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3544824", "genome_size_ungapped": "3544824", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900199185.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3566", "protein_coding_gene_count": "3488", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-28", "dateModified": "2017-09-28", "datePublished": "2017-09-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonas guangdongensis" ], "sample_taxid": [ "1141890" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.963 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3544824", "Number of Sequences": "6", "Longest Sequences (bp)": "1465339", "N50 (bp)": "988988", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.6", "Number of CDSs": "3532", "Average Protein Length": "308.4", "Coding Ratio (%)": "92.2", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingomonas guangdongensis", "strain": "strain=CGMCC 1.12672", "accession": "GCA_900199185.1", 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas adhaesiva", "strain": "strain=DSM 7418", "accession": "GCA_002374855.1", "taxid": 28212, "species_taxid": 28212, "relation_to_type": "type", "validated": true, "ani": 79.4016, "matched_fragments": 520, "total_fragments": 1178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas yantingensis", "strain": "strain=DSM 27244", "accession": "GCA_014199325.1", "taxid": 1241761, "species_taxid": 1241761, "relation_to_type": "type", "validated": true, "ani": 79.3745, "matched_fragments": 504, "total_fragments": 1178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas koreensis", "strain": "strain=KCTC 2882", "accession": "GCA_003953035.1", "taxid": 93064, "species_taxid": 93064, "relation_to_type": "type", "validated": true, "ani": 79.1972, "matched_fragments": 477, "total_fragments": 1178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas koreensis", "strain": "strain=NBRC 16723", "accession": "GCA_001598395.1", "taxid": 93064, "species_taxid": 93064, "relation_to_type": "type", "validated": true, "ani": 79.1831, "matched_fragments": 472, "total_fragments": 1178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas koreensis", "strain": "strain=JSS26", "accession": "GCA_002797435.1", "taxid": 93064, "species_taxid": 93064, "relation_to_type": "type", "validated": true, "ani": 79.16, "matched_fragments": 480, "total_fragments": 1178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas carotinifaciens", "strain": "strain=DSM 27347", "accession": "GCA_009789535.1", "taxid": 1166323, "species_taxid": 1166323, "relation_to_type": "type", "validated": true, "ani": 79.0935, "matched_fragments": 474, "total_fragments": 1178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas pokkalii", "strain": "strain=L3B27", "accession": "GCA_003096275.1", "taxid": 2175090, "species_taxid": 2175090, "relation_to_type": "type", "validated": true, "ani": 78.9634, "matched_fragments": 430, "total_fragments": 1178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas psychrotolerans", "strain": "strain=Cra20", "accession": "GCA_002796605.1", "taxid": 1327635, "species_taxid": 1327635, "relation_to_type": "type", "validated": true, "ani": 78.5902, "matched_fragments": 466, "total_fragments": 1178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas panacis", "strain": "strain=DCY99", "accession": "GCA_001717955.1", "taxid": 1560345, "species_taxid": 1560345, "relation_to_type": "type", "validated": true, "ani": 78.5461, "matched_fragments": 458, "total_fragments": 1178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas parva", "strain": "strain=17J27-24", "accession": "GCA_004564275.1", "taxid": 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