{ "type": "genome", "identifier": "GCF_900199195.1", "organism": "Paracoccus seriniphilus", "title": "Paracoccus seriniphilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900199195.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444959", "wgs_master": "FZQB00000000.1", "refseq_category": "na", "taxid": "184748", "species_taxid": "184748", "organism_name": "Paracoccus seriniphilus", "infraspecific_name": "strain=DSM 14827", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/07/16", "asm_name": "IMG-taxon 2737471638 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900199195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/199/195/GCF_900199195.1_IMG-taxon_2737471638_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4195486", "genome_size_ungapped": "4195486", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "60", "contig_count": "60", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900199195.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4049", "protein_coding_gene_count": "3895", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-07-16", "dateModified": "2017-07-16", "datePublished": "2017-07-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Paracoccus seriniphilus" ], "sample_taxid": [ "184748" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "1.165 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4195486", "Number of Sequences": "60", "Longest Sequences (bp)": "514638", "N50 (bp)": "263354", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.6", "Number of CDSs": "3944", "Average Protein Length": "322.0", "Coding Ratio (%)": "90.8", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paracoccus seriniphilus", "strain": "strain=DSM 14827", "accession": "GCA_900199195.1", 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1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus hibiscisoli", "strain": "strain=CCTCC AB2016182", "accession": "GCA_005048265.1", "taxid": 2023261, "species_taxid": 2023261, "relation_to_type": "type", "validated": true, "ani": 79.6996, "matched_fragments": 548, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus shandongensis", "strain": "strain=wg2", "accession": "GCA_017315735.1", "taxid": 2816048, "species_taxid": 2816048, "relation_to_type": "type", "validated": true, "ani": 79.5303, "matched_fragments": 533, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus caeni", "strain": "strain=MJ17", "accession": "GCA_016629665.1", "taxid": 657651, "species_taxid": 657651, "relation_to_type": "type", "validated": true, "ani": 79.5168, "matched_fragments": 493, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { 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