{
    "type": "genome",
    "identifier": "GCF_900199215.1",
    "organism": "Amphiplicatus metriothermophilus",
    "title": "Amphiplicatus metriothermophilus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900199215.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06297382",
        "wgs_master": "FZQA00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1519374",
        "species_taxid": "1519374",
        "organism_name": "Amphiplicatus metriothermophilus",
        "infraspecific_name": "strain=CGMCC 1.12710",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/07/16",
        "asm_name": "IMG-taxon 2737472027 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900199215.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/199/215/GCF_900199215.1_IMG-taxon_2737472027_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3160729",
        "genome_size_ungapped": "3160729",
        "gc_percent": "66.500000",
        "replicon_count": "0",
        "scaffold_count": "18",
        "contig_count": "18",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900199215.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "3007",
        "protein_coding_gene_count": "2926",
        "non_coding_gene_count": "50",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-07-16",
    "dateModified": "2017-07-16",
    "datePublished": "2017-07-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Amphiplicatus metriothermophilus"
        ],
        "sample_taxid": [
            "1519374"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.860 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3160729",
        "Number of Sequences": "18",
        "Longest Sequences (bp)": "959312",
        "N50 (bp)": "639398",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.7",
        "Number of CDSs": "2962",
        "Average Protein Length": "321.8",
        "Coding Ratio (%)": "90.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Amphiplicatus metriothermophilus",
                "strain": "strain=CGMCC 1.12710",
                "accession": "GCA_900199215.1",
                "taxid": 1519374,
                "species_taxid": 1519374,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1045,
                "total_fragments": 1046,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Amphiplicatus metriothermophilus",
                "strain": "strain=DSM 105738",
                "accession": "GCA_014199495.1",
                "taxid": 1519374,
                "species_taxid": 1519374,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9998,
                "matched_fragments": 1046,
                "total_fragments": 1046,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Marinicaulis flavus",
                "strain": "strain=SY-3-19",
                "accession": "GCA_002943565.1",
                "taxid": 2058213,
                "species_taxid": 2058213,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8538,
                "matched_fragments": 410,
                "total_fragments": 1046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquisalinus flavus",
                "strain": "strain=CGMCC 1.12921",
                "accession": "GCA_014640095.1",
                "taxid": 1526572,
                "species_taxid": 1526572,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.19,
                "matched_fragments": 189,
                "total_fragments": 1046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquisalinus flavus",
                "strain": "strain=D11M-2",
                "accession": "GCA_022559625.1",
                "taxid": 1526572,
                "species_taxid": 1526572,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1721,
                "matched_fragments": 179,
                "total_fragments": 1046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parvularcula oceani",
                "strain": "strain=JLT2013",
                "accession": "GCA_000733125.1",
                "taxid": 1247963,
                "species_taxid": 1247963,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1156,
                "matched_fragments": 241,
                "total_fragments": 1046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinicauda salina",
                "strain": "strain=WD6-1",
                "accession": "GCA_003122085.1",
                "taxid": 2135793,
                "species_taxid": 2135793,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8442,
                "matched_fragments": 249,
                "total_fragments": 1046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blastochloris tepida",
                "strain": "strain=GI",
                "accession": "GCA_003966715.1",
                "taxid": 2233851,
                "species_taxid": 2233851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7064,
                "matched_fragments": 187,
                "total_fragments": 1046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paracoccus pantotrophus",
                "strain": "strain=DSM 2944",
                "accession": "GCA_003633525.1",
                "taxid": 82367,
                "species_taxid": 82367,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3117,
                "matched_fragments": 151,
                "total_fragments": 1046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pelagibius marinus",
                "strain": "strain=NBU2595",
                "accession": "GCA_014925385.1",
                "taxid": 2762760,
                "species_taxid": 2762760,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3079,
                "matched_fragments": 149,
                "total_fragments": 1046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobrevis albus",
                "strain": "strain=L22",
                "accession": "GCA_015904235.1",
                "taxid": 2793297,
                "species_taxid": 2793297,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2938,
                "matched_fragments": 253,
                "total_fragments": 1046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium variabile",
                "strain": "strain=DSM 16961",
                "accession": "GCA_001043975.1",
                "taxid": 298794,
                "species_taxid": 298794,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2058,
                "matched_fragments": 200,
                "total_fragments": 1046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Starkeya koreensis",
                "strain": "strain=Jip08",
                "accession": "GCA_023016525.1",
                "taxid": 266121,
                "species_taxid": 266121,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1856,
                "matched_fragments": 208,
                "total_fragments": 1046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parvibaculum lavamentivorans",
                "strain": "strain=DS-1",
                "accession": "GCA_000017565.1",
                "taxid": 256618,
                "species_taxid": 256618,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1827,
                "matched_fragments": 124,
                "total_fragments": 1046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium agreste",
                "strain": "strain=CNPSo 4010",
                "accession": "GCA_016031625.1",
                "taxid": 2751811,
                "species_taxid": 2751811,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1511,
                "matched_fragments": 178,
                "total_fragments": 1046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanicella actignis",
                "strain": "strain=DSM 22673",
                "accession": "GCA_008124525.1",
                "taxid": 1189325,
                "species_taxid": 1189325,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.985,
                "matched_fragments": 243,
                "total_fragments": 1046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium currus",
                "strain": "strain=PR1016A",
                "accession": "GCA_003058325.1",
                "taxid": 2051553,
                "species_taxid": 2051553,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9761,
                "matched_fragments": 213,
                "total_fragments": 1046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylorubrum aminovorans",
                "strain": "strain=NBRC 15686",
                "accession": "GCA_022179725.1",
                "taxid": 269069,
                "species_taxid": 269069,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9233,
                "matched_fragments": 164,
                "total_fragments": 1046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium isbiliense",
                "strain": "strain=DSM 17168",
                "accession": "GCA_022179325.1",
                "taxid": 315478,
                "species_taxid": 315478,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8486,
                "matched_fragments": 227,
                "total_fragments": 1046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseivivax isoporae",
                "strain": "strain=LMG 25204",
                "accession": "GCA_000521865.1",
                "taxid": 591206,
                "species_taxid": 591206,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8221,
                "matched_fragments": 173,
                "total_fragments": 1046,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900199215.1",
                "gtdb_species": "s__Amphiplicatus metriothermophilus",
                "ani": 100.0,
                "matched_fragments": 1045,
                "total_fragments": 1046,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Amphiplicatus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_016125425.1",
                "gtdb_species": "s__Amphiplicatus sp016125425",
                "ani": 77.857,
                "matched_fragments": 360,
                "total_fragments": 1046,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Amphiplicatus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002943565.1",
                "gtdb_species": "s__Marinicaulis flavus",
                "ani": 77.8384,
                "matched_fragments": 412,
                "total_fragments": 1046,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Marinicaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013389105.1",
                "gtdb_species": "s__JACADZ01 sp013389105",
                "ani": 77.8028,
                "matched_fragments": 301,
                "total_fragments": 1046,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__JACADZ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001657385.1",
                "gtdb_species": "s__Marinicaulis sp001657385",
                "ani": 77.6743,
                "matched_fragments": 420,
                "total_fragments": 1046,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Marinicaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001767925.1",
                "gtdb_species": "s__CV81 sp001767925",
                "ani": 77.434,
                "matched_fragments": 294,
                "total_fragments": 1046,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__CV81",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003506635.1",
                "gtdb_species": "s__CV81 sp003506635",
                "ani": 77.2868,
                "matched_fragments": 259,
                "total_fragments": 1046,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__CV81",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902826095.1",
                "gtdb_species": "s__CV81 sp902826095",
                "ani": 77.218,
                "matched_fragments": 356,
                "total_fragments": 1046,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__CV81",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002704915.1",
                "gtdb_species": "s__Marinicaulis sp002704915",
                "ani": 77.2144,
                "matched_fragments": 309,
                "total_fragments": 1046,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Marinicaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000733125.1",
                "gtdb_species": "s__Parvularcula oceani",
                "ani": 77.1147,
                "matched_fragments": 241,
                "total_fragments": 1046,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Parvularcula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008824185.1",
                "gtdb_species": "s__Paracoccus pantotrophus",
                "ani": 76.3077,
                "matched_fragments": 156,
                "total_fragments": 1046,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.22",
                "min_intra_species_ani": "98.98",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_008933605.1",
                "gtdb_species": "s__Albidovulum sp008933605",
                "ani": 76.1302,
                "matched_fragments": 117,
                "total_fragments": 1046,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Albidovulum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008124525.1",
                "gtdb_species": "s__Oceanicella actignis",
                "ani": 75.9881,
                "matched_fragments": 244,
                "total_fragments": 1046,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Oceanicella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.87",
                "min_intra_species_ani": "98.87",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000521865.1",
                "gtdb_species": "s__Roseivivax isoporae",
                "ani": 75.7771,
                "matched_fragments": 179,
                "total_fragments": 1046,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseivivax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 3160729.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Amphiplicatus",
        "metriothermophilus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}