{
    "type": "genome",
    "identifier": "GCF_900199455.1",
    "organism": "Mesorhizobium carmichaelinearum",
    "title": "Mesorhizobium carmichaelinearum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "MURDOCH UNIVERSITY",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900199455.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA104174102",
        "wgs_master": "FZQR00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1208188",
        "species_taxid": "1208188",
        "organism_name": "Mesorhizobium carmichaelinearum",
        "infraspecific_name": "strain=ICMP 18942",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/08/22",
        "asm_name": "ICMP 18942",
        "asm_submitter": "MURDOCH UNIVERSITY",
        "gbrs_paired_asm": "GCA_900199455.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/199/455/GCF_900199455.1_ICMP_18942",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8575853",
        "genome_size_ungapped": "8575853",
        "gc_percent": "62.500000",
        "replicon_count": "0",
        "scaffold_count": "233",
        "contig_count": "233",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900199455.1-RS_2024_08_07",
        "annotation_date": "2024-08-07",
        "total_gene_count": "8470",
        "protein_coding_gene_count": "7991",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-08-22",
    "dateModified": "2017-08-22",
    "datePublished": "2017-08-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mesorhizobium carmichaelinearum"
        ],
        "sample_taxid": [
            "1208188"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "2.387 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8573814",
        "Number of Sequences": "220",
        "Longest Sequences (bp)": "759695",
        "N50 (bp)": "328797",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.4",
        "Number of CDSs": "8366",
        "Average Protein Length": "290.7",
        "Coding Ratio (%)": "85.1",
        "Number of rRNAs": "6",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Mesorhizobium carmichaelinearum",
                "strain": "strain=ICMP 18942",
                "accession": "GCA_900199455.1",
                "taxid": 1208188,
                "species_taxid": 1208188,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2775,
                "total_fragments": 2783,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mesorhizobium jarvisii",
                "strain": "strain=LMG 28313",
                "accession": "GCA_003601985.1",
                "taxid": 1777867,
                "species_taxid": 1777867,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.5396,
                "matched_fragments": 1821,
                "total_fragments": 2783,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesorhizobium jarvisii",
                "strain": "strain=ATCC 33669",
                "accession": "GCA_013170785.1",
                "taxid": 1777867,
                "species_taxid": 1777867,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.3579,
                "matched_fragments": 1859,
                "total_fragments": 2783,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesorhizobium japonicum",
                "strain": "strain=MAFF 303099",
                "accession": "GCA_000009625.1",
                "taxid": 2066070,
                "species_taxid": 2066070,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.2391,
                "matched_fragments": 1900,
                "total_fragments": 2783,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesorhizobium intechi",
                "strain": "strain=BD68",
                "accession": "GCA_002879535.2",
                "taxid": 537601,
                "species_taxid": 537601,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.5488,
                "matched_fragments": 1583,
                "total_fragments": 2783,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesorhizobium erdmanii",
                "strain": "strain=USDA 3471",
                "accession": "GCA_000472705.1",
                "taxid": 1777866,
                "species_taxid": 1777866,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.1357,
                "matched_fragments": 1817,
                "total_fragments": 2783,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesorhizobium norvegicum",
                "strain": "strain=10.2.2",
                "accession": "GCA_004919685.1",
                "taxid": 1085774,
                "species_taxid": 1085774,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.9809,
                "matched_fragments": 1858,
                "total_fragments": 2783,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesorhizobium comanense",
                "strain": "strain=3P27G6",
                "accession": "GCA_005503535.1",
                "taxid": 2502215,
                "species_taxid": 2502215,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.459,
                "matched_fragments": 1736,
                "total_fragments": 2783,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesorhizobium onobrychidis",
                "strain": "strain=OM4",
                "accession": "GCA_024707545.1",
                "taxid": 2775404,
                "species_taxid": 2775404,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.7746,
                "matched_fragments": 1431,
                "total_fragments": 2783,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitratireductor arenosus",
                "strain": "strain=CAU 1489",
                "accession": "GCA_009742725.1",
                "taxid": 2682096,
                "species_taxid": 2682096,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.026,
                "matched_fragments": 654,
                "total_fragments": 2783,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudaminobacter soli",
                "strain": "strain=19-2017",
                "accession": "GCA_018310375.1",
                "taxid": 2831468,
                "species_taxid": 2831468,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0199,
                "matched_fragments": 750,
                "total_fragments": 2783,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudaminobacter soli",
                "strain": "strain=HC19",
                "accession": "GCA_014595955.1",
                "taxid": 2831468,
                "species_taxid": 2831468,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0184,
                "matched_fragments": 750,
                "total_fragments": 2783,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900199455.1",
                "gtdb_species": "s__Mesorhizobium carmichaelinearum",
                "ani": 100.0,
                "matched_fragments": 2774,
                "total_fragments": 2783,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014189455.1",
                "gtdb_species": "s__Mesorhizobium huakuii_A",
                "ani": 94.4631,
                "matched_fragments": 2165,
                "total_fragments": 2783,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002356515.1",
                "gtdb_species": "s__Mesorhizobium loti_C",
                "ani": 93.2475,
                "matched_fragments": 2160,
                "total_fragments": 2783,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.70",
                "min_intra_species_ani": "98.70",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003601985.1",
                "gtdb_species": "s__Mesorhizobium jarvisii",
                "ani": 91.547,
                "matched_fragments": 1820,
                "total_fragments": 2783,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.40",
                "min_intra_species_ani": "98.93",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_016467435.1",
                "gtdb_species": "s__Mesorhizobium sp016467435",
                "ani": 91.3006,
                "matched_fragments": 1759,
                "total_fragments": 2783,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.58",
                "min_intra_species_ani": "98.58",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000009625.1",
                "gtdb_species": "s__Mesorhizobium japonicum",
                "ani": 91.2205,
                "matched_fragments": 1902,
                "total_fragments": 2783,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.35",
                "min_intra_species_ani": "97.93",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 23,
                "status": "-"
            },
            {
                "accession": "GCF_016756495.1",
                "gtdb_species": "s__Mesorhizobium sp016756495",
                "ani": 91.1754,
                "matched_fragments": 1959,
                "total_fragments": 2783,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002295115.1",
                "gtdb_species": "s__Mesorhizobium sp002295115",
                "ani": 91.0725,
                "matched_fragments": 1839,
                "total_fragments": 2783,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "96.42",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_013170805.1",
                "gtdb_species": "s__Mesorhizobium sp013170805",
                "ani": 90.9595,
                "matched_fragments": 1880,
                "total_fragments": 2783,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002879535.1",
                "gtdb_species": "s__Mesorhizobium intechi",
                "ani": 90.5428,
                "matched_fragments": 1584,
                "total_fragments": 2783,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.394,
        "cell_length": 0.163,
        "doubling_h": 0.38,
        "growth_tmp": 28.738,
        "optimum_tmp": 28.233,
        "optimum_ph": 7.1,
        "genome_size": 6924855.425,
        "gc_content": 61.795,
        "coding_genes": 6455.004,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 52.916,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.923,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Mesorhizobium",
        "carmichaelinearum"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}