{
    "type": "genome",
    "identifier": "GCF_900199635.1",
    "organism": "Anaerotruncus massiliensis (ex Togo et al. 2019)",
    "title": "Anaerotruncus massiliensis (ex Togo et al. 2019)",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "URMITE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900199635.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA104168367",
        "wgs_master": "OEJM00000000.1",
        "refseq_category": "na",
        "taxid": "1673720",
        "species_taxid": "1673720",
        "organism_name": "Anaerotruncus massiliensis (ex Togo et al. 2019)",
        "infraspecific_name": "strain=AT3",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/12/22",
        "asm_name": "PRJEB19460",
        "asm_submitter": "URMITE",
        "gbrs_paired_asm": "GCA_900199635.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/199/635/GCF_900199635.1_PRJEB19460",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3145951",
        "genome_size_ungapped": "3145940",
        "gc_percent": "63.500000",
        "replicon_count": "0",
        "scaffold_count": "7",
        "contig_count": "8",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2023-07-16",
        "total_gene_count": "2945",
        "protein_coding_gene_count": "2863",
        "non_coding_gene_count": "63",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-12-22",
    "dateModified": "2017-12-22",
    "datePublished": "2017-12-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Anaerotruncus massiliensis (ex Togo et al. 2019)"
        ],
        "sample_taxid": [
            "1673720"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.868 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3145951",
        "Number of Sequences": "7",
        "Longest Sequences (bp)": "3029664",
        "N50 (bp)": "3029664",
        "Gap Ratio (%)": "0.000445",
        "GCcontent (%)": "63.6",
        "Number of CDSs": "2906",
        "Average Protein Length": "319.4",
        "Coding Ratio (%)": "88.5",
        "Number of rRNAs": "8",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Anaerotruncus massiliensis",
                "strain": "strain=AT3",
                "accession": "GCA_900199635.1",
                "taxid": 1673720,
                "species_taxid": 1673720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1044,
                "total_fragments": 1045,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Anaerotruncus rubiinfantis",
                "strain": "strain=MT15",
                "accession": "GCA_900078395.1",
                "taxid": 1720200,
                "species_taxid": 1720200,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7543,
                "matched_fragments": 315,
                "total_fragments": 1045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerotruncus colihominis",
                "strain": "strain=DSM 17241",
                "accession": "GCA_025146135.1",
                "taxid": 169435,
                "species_taxid": 169435,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6775,
                "matched_fragments": 222,
                "total_fragments": 1045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Provencibacterium massiliense",
                "strain": "strain=Marseille-P2780",
                "accession": "GCA_900169495.1",
                "taxid": 1841868,
                "species_taxid": 1841868,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6285,
                "matched_fragments": 212,
                "total_fragments": 1045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerotruncus colihominis",
                "strain": "strain=DSM 17241",
                "accession": "GCA_000154565.1",
                "taxid": 169435,
                "species_taxid": 169435,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6236,
                "matched_fragments": 223,
                "total_fragments": 1045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocea massiliensis",
                "strain": "strain=Marseille-P2769",
                "accession": "GCA_900104615.1",
                "taxid": 1841867,
                "species_taxid": 1841867,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8873,
                "matched_fragments": 86,
                "total_fragments": 1045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marasmitruncus massiliensis",
                "strain": "strain=Marseille-P3646",
                "accession": "GCA_900186535.1",
                "taxid": 1944642,
                "species_taxid": 1944642,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4876,
                "matched_fragments": 116,
                "total_fragments": 1045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ligaoa zhengdingensis",
                "strain": "strain=NSJ-31",
                "accession": "GCA_014384885.1",
                "taxid": 2763658,
                "species_taxid": 2763658,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4871,
                "matched_fragments": 190,
                "total_fragments": 1045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dysosmobacter welbionis",
                "strain": "strain=J115",
                "accession": "GCA_005121165.3",
                "taxid": 2093857,
                "species_taxid": 2093857,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3145,
                "matched_fragments": 74,
                "total_fragments": 1045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Feifania hominis",
                "strain": "strain=BX7",
                "accession": "GCA_014384765.1",
                "taxid": 2763660,
                "species_taxid": 2763660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.24,
                "matched_fragments": 96,
                "total_fragments": 1045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium hattorii",
                "strain": "strain=APC922/41-1",
                "accession": "GCA_003287455.1",
                "taxid": 2935520,
                "species_taxid": 2935520,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2475,
                "matched_fragments": 80,
                "total_fragments": 1045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas yunnanensis",
                "strain": "strain=YIM 3",
                "accession": "GCA_019898765.1",
                "taxid": 310400,
                "species_taxid": 310400,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.181,
                "matched_fragments": 75,
                "total_fragments": 1045,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arsenicicoccus cauae",
                "strain": "strain=MKL-02",
                "accession": "GCA_009707125.1",
                "taxid": 2663847,
                "species_taxid": 2663847,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1757,
                "matched_fragments": 67,
                "total_fragments": 1045,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900199635.1",
                "gtdb_species": "s__Anaerotruncus massiliensis",
                "ani": 100.0,
                "matched_fragments": 1044,
                "total_fragments": 1045,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Anaerotruncus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.56",
                "min_intra_species_ani": "98.01",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900078395.1",
                "gtdb_species": "s__Anaerotruncus rubiinfantis",
                "ani": 78.7543,
                "matched_fragments": 315,
                "total_fragments": 1045,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Anaerotruncus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.23",
                "min_intra_species_ani": "99.21",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000154565.1",
                "gtdb_species": "s__Anaerotruncus colihominis",
                "ani": 78.6306,
                "matched_fragments": 224,
                "total_fragments": 1045,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Anaerotruncus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.95",
                "min_intra_species_ani": "97.75",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 16,
                "status": "-"
            },
            {
                "accession": "GCA_019114825.1",
                "gtdb_species": "s__Anaerotruncus excrementipullorum",
                "ani": 78.4304,
                "matched_fragments": 206,
                "total_fragments": 1045,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Anaerotruncus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.88",
                "min_intra_species_ani": "99.88",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_010206195.1",
                "gtdb_species": "s__Anaerotruncus colihominis_A",
                "ani": 77.8724,
                "matched_fragments": 223,
                "total_fragments": 1045,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Anaerotruncus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.98",
                "min_intra_species_ani": "98.75",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_004340125.1",
                "gtdb_species": "s__Harryflintia acetispora",
                "ani": 77.644,
                "matched_fragments": 210,
                "total_fragments": 1045,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Harryflintia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.73",
                "min_intra_species_ani": "98.54",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_014384885.1",
                "gtdb_species": "s__Hydrogenoanaerobacterium sp014384885",
                "ani": 77.4709,
                "matched_fragments": 191,
                "total_fragments": 1045,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Hydrogenoanaerobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.59",
                "min_intra_species_ani": "98.59",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_910585525.1",
                "gtdb_species": "s__Angelakisella sp910585525",
                "ani": 77.2289,
                "matched_fragments": 114,
                "total_fragments": 1045,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Angelakisella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_904398655.1",
                "gtdb_species": "s__Anaerotruncus sp904398655",
                "ani": 77.1693,
                "matched_fragments": 125,
                "total_fragments": 1045,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Anaerotruncus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_904398325.1",
                "gtdb_species": "s__Neoruminococcus faecicola",
                "ani": 77.1529,
                "matched_fragments": 92,
                "total_fragments": 1045,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Neoruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019113125.1",
                "gtdb_species": "s__Pygmaiobacter gallistercoris",
                "ani": 76.9909,
                "matched_fragments": 77,
                "total_fragments": 1045,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Pygmaiobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910586875.1",
                "gtdb_species": "s__Anaerotruncus sp910586875",
                "ani": 76.7044,
                "matched_fragments": 96,
                "total_fragments": 1045,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Anaerotruncus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004554485.1",
                "gtdb_species": "s__Angelakisella sp004554485",
                "ani": 76.3563,
                "matched_fragments": 65,
                "total_fragments": 1045,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Angelakisella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.18",
                "min_intra_species_ani": "96.00",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 6,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.544,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 8.25,
        "genome_size": 3563075.5,
        "gc_content": 54.2,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Anaerotruncus",
        "massiliensis",
        "(ex",
        "Togo",
        "et",
        "al.",
        "2019)"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}