{ "type": "genome", "identifier": "GCF_900205755.1", "organism": "Polynucleobacter meluiroseus", "title": "Polynucleobacter meluiroseus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900205755.1", "bioproject": "PRJNA224116", "biosample": "SAMN06295945", "wgs_master": "OANS00000000.1", "refseq_category": "reference genome", "taxid": "1938814", "species_taxid": "1938814", "organism_name": "Polynucleobacter meluiroseus", "infraspecific_name": "strain=AP-Melu-1000-B4", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/21", "asm_name": "IMG-taxon 2710724120 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900205755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/205/755/GCF_900205755.1_IMG-taxon_2710724120_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1885561", "genome_size_ungapped": "1885561", "gc_percent": "46.500000", "replicon_count": "0", "scaffold_count": "11", "contig_count": "11", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900205755.1-RS_2024_03_12", "annotation_date": "2024-03-12", "total_gene_count": "1984", "protein_coding_gene_count": "1915", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-21", "dateModified": "2017-09-21", "datePublished": "2017-09-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Polynucleobacter meluiroseus" ], "sample_taxid": [ "1938814" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Corsica (Lac de Melu)" ], "sample_host_location_id": [], "data_size": "0.539 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1885561", "Number of Sequences": "11", "Longest Sequences (bp)": "616205", "N50 (bp)": "409519", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.6", "Number of CDSs": "1919", "Average Protein Length": "299.5", "Coding Ratio (%)": "91.4", "Number of rRNAs": "3", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polynucleobacter meluiroseus", "strain": "strain=AP-Melu-1000-B4", "accession": "GCA_900205755.1", "taxid": 1938814, "species_taxid": 1938814, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 625, "total_fragments": 625, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Polynucleobacter campilacus", "strain": "strain=MWH-Feld-100", "accession": "GCA_002206625.1", "taxid": 1743163, "species_taxid": 1743163, "relation_to_type": "type", "validated": true, "ani": 79.7432, "matched_fragments": 219, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter sphagniphilus", "strain": "strain=MWH-Weng1-1", "accession": "GCA_001953355.1", "taxid": 1743169, "species_taxid": 1743169, "relation_to_type": "type", "validated": true, "ani": 79.4368, "matched_fragments": 205, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter arcticus", "strain": "strain=UK-Long2-W17", "accession": "GCA_013307205.1", "taxid": 1743165, "species_taxid": 1743165, "relation_to_type": "type", "validated": true, "ani": 79.3393, "matched_fragments": 225, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter aenigmaticus", "strain": "strain=MWH-K35W1", "accession": "GCA_002206635.1", "taxid": 1743164, "species_taxid": 1743164, "relation_to_type": "type", "validated": true, "ani": 79.2396, "matched_fragments": 220, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter hallstattensis", "strain": "strain=MWH-Hall10", "accession": "GCA_018881835.1", "taxid": 1855586, "species_taxid": 1855586, "relation_to_type": "type", "validated": true, "ani": 79.2274, "matched_fragments": 219, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter paludilacus", "strain": "strain=MWH-Mekk-C3", "accession": "GCA_018687595.1", "taxid": 1855895, "species_taxid": 1855895, "relation_to_type": "type", "validated": true, "ani": 79.2119, "matched_fragments": 162, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter finlandensis", "strain": "strain=MWH-Mekk-B1", "accession": "GCA_018881755.1", "taxid": 1855894, "species_taxid": 1855894, "relation_to_type": "type", "validated": true, "ani": 79.184, "matched_fragments": 214, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter corsicus", "strain": "strain=AP-Melu-1000-A1", "accession": "GCA_018688255.1", "taxid": 2081042, "species_taxid": 2081042, "relation_to_type": "type", "validated": true, "ani": 79.1791, "matched_fragments": 219, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter hirudinilacicola", "strain": "strain=MWH-EgelM1-30-B4", "accession": "GCA_002192535.1", "taxid": 1743166, "species_taxid": 1743166, "relation_to_type": "type", "validated": true, "ani": 79.1064, "matched_fragments": 198, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter alcilacus", "strain": "strain=UK-Pondora-W15", "accession": "GCA_018881545.1", "taxid": 1819739, "species_taxid": 1819739, "relation_to_type": "type", "validated": true, "ani": 79.069, "matched_fragments": 208, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter parvulilacunae", "strain": "strain=Ross1-W9", "accession": "GCA_018881715.1", "taxid": 1855631, "species_taxid": 1855631, "relation_to_type": "type", "validated": true, "ani": 79.0269, "matched_fragments": 208, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter duraquae", "strain": "strain=MWH-MoK4", "accession": "GCA_000973625.1", "taxid": 1835254, "species_taxid": 1835254, "relation_to_type": "type", "validated": true, "ani": 78.9626, "matched_fragments": 220, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter bastaniensis", "strain": "strain=AP-Basta-1000A-D1", "accession": "GCA_018882205.1", "taxid": 2081039, "species_taxid": 2081039, "relation_to_type": "type", "validated": true, "ani": 78.9625, "matched_fragments": 218, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter antarcticus", "strain": "strain=LimPoW16", "accession": "GCA_013307245.1", "taxid": 1743162, "species_taxid": 1743162, "relation_to_type": "type", "validated": true, "ani": 78.8543, "matched_fragments": 206, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter nymphae", "strain": "strain=AP-Mumm-500A-B3", "accession": "GCA_018882155.1", "taxid": 2081043, "species_taxid": 2081043, "relation_to_type": "type", "validated": true, "ani": 78.6709, "matched_fragments": 217, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900205755.1", "gtdb_species": "s__Polynucleobacter meluiroseus", "ani": 100.0, "matched_fragments": 625, "total_fragments": 625, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_018882405.1", "gtdb_species": "s__Polynucleobacter sp018882405", "ani": 79.6383, "matched_fragments": 214, "total_fragments": 625, "gtdb_taxonomy": 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