{
    "type": "genome",
    "identifier": "GCF_900215145.1",
    "organism": "Geodermatophilus sabuli",
    "title": "Geodermatophilus sabuli",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900215145.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06893097",
        "wgs_master": "OBDO00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1564158",
        "species_taxid": "1564158",
        "organism_name": "Geodermatophilus sabuli",
        "infraspecific_name": "strain=DSM 46844",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/09/28",
        "asm_name": "IMG-taxon 2693429865 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900215145.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/215/145/GCF_900215145.1_IMG-taxon_2693429865_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5519188",
        "genome_size_ungapped": "5518834",
        "gc_percent": "74.000000",
        "replicon_count": "0",
        "scaffold_count": "25",
        "contig_count": "25",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900215145.1-RS_2024_05_03",
        "annotation_date": "2024-05-03",
        "total_gene_count": "5266",
        "protein_coding_gene_count": "5148",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-09-28",
    "dateModified": "2017-09-28",
    "datePublished": "2017-09-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Geodermatophilus sabuli"
        ],
        "sample_taxid": [
            "1564158"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Tunisia: Sahara desert, Ong Jmal"
        ],
        "sample_host_location_id": [],
        "data_size": "1.444 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5519188",
        "Number of Sequences": "25",
        "Longest Sequences (bp)": "1169079",
        "N50 (bp)": "397166",
        "Gap Ratio (%)": "0.006414",
        "GCcontent (%)": "74.0",
        "Number of CDSs": "5255",
        "Average Protein Length": "314.7",
        "Coding Ratio (%)": "89.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Geodermatophilus sabuli",
                "strain": "strain=DSM 46844",
                "accession": "GCA_900215145.1",
                "taxid": 1564158,
                "species_taxid": 1564158,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1826,
                "total_fragments": 1826,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Geodermatophilus sabuli",
                "strain": "strain=CECT 8820",
                "accession": "GCA_014191795.1",
                "taxid": 1564158,
                "species_taxid": 1564158,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9988,
                "matched_fragments": 1824,
                "total_fragments": 1826,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Geodermatophilus siccatus",
                "strain": "strain=DSM 45419",
                "accession": "GCA_900103785.1",
                "taxid": 1137991,
                "species_taxid": 1137991,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.2739,
                "matched_fragments": 1150,
                "total_fragments": 1826,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geodermatophilus chilensis",
                "strain": "strain=B12",
                "accession": "GCA_002802985.1",
                "taxid": 2035835,
                "species_taxid": 2035835,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.0222,
                "matched_fragments": 1005,
                "total_fragments": 1826,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geodermatophilus obscurus",
                "strain": "strain=DSM 43160",
                "accession": "GCA_000025345.1",
                "taxid": 1861,
                "species_taxid": 1861,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9652,
                "matched_fragments": 1145,
                "total_fragments": 1826,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geodermatophilus poikilotrophus",
                "strain": "strain=DSM 44209",
                "accession": "GCA_900111455.1",
                "taxid": 1333667,
                "species_taxid": 1333667,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9343,
                "matched_fragments": 1124,
                "total_fragments": 1826,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geodermatophilus africanus",
                "strain": "strain=DSM 45422",
                "accession": "GCA_900107105.1",
                "taxid": 1137993,
                "species_taxid": 1137993,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.836,
                "matched_fragments": 1116,
                "total_fragments": 1826,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geodermatophilus pulveris",
                "strain": "strain=DSM 46839",
                "accession": "GCA_900188375.1",
                "taxid": 1564159,
                "species_taxid": 1564159,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.5932,
                "matched_fragments": 1030,
                "total_fragments": 1826,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geodermatophilus tzadiensis",
                "strain": "strain=DSM 45416",
                "accession": "GCA_003002915.1",
                "taxid": 1137988,
                "species_taxid": 1137988,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8489,
                "matched_fragments": 1071,
                "total_fragments": 1826,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geodermatophilus saharensis",
                "strain": "strain=DSM 45423",
                "accession": "GCA_900188205.1",
                "taxid": 1137994,
                "species_taxid": 1137994,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6086,
                "matched_fragments": 1072,
                "total_fragments": 1826,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geodermatophilus normandii",
                "strain": "strain=DSM 45417",
                "accession": "GCA_003182485.1",
                "taxid": 1137989,
                "species_taxid": 1137989,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4526,
                "matched_fragments": 1046,
                "total_fragments": 1826,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geodermatophilus daqingensis",
                "strain": "strain=DSM 104001",
                "accession": "GCA_013408985.1",
                "taxid": 2026353,
                "species_taxid": 2026353,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6334,
                "matched_fragments": 1058,
                "total_fragments": 1826,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900215145.1",
                "gtdb_species": "s__Geodermatophilus sabuli",
                "ani": 100.0,
                "matched_fragments": 1826,
                "total_fragments": 1826,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900103785.1",
                "gtdb_species": "s__Geodermatophilus siccatus",
                "ani": 85.2224,
                "matched_fragments": 1155,
                "total_fragments": 1826,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900104025.1",
                "gtdb_species": "s__Geodermatophilus sp900104025",
                "ani": 85.0898,
                "matched_fragments": 1116,
                "total_fragments": 1826,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004571065.1",
                "gtdb_species": "s__Geodermatophilus sp004571065",
                "ani": 85.0522,
                "matched_fragments": 944,
                "total_fragments": 1826,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002802985.1",
                "gtdb_species": "s__Geodermatophilus chilensis",
                "ani": 85.0392,
                "matched_fragments": 1004,
                "total_fragments": 1826,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900111455.1",
                "gtdb_species": "s__Geodermatophilus poikilotrophus",
                "ani": 84.9687,
                "matched_fragments": 1120,
                "total_fragments": 1826,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000025345.1",
                "gtdb_species": "s__Geodermatophilus obscurus",
                "ani": 84.9393,
                "matched_fragments": 1148,
                "total_fragments": 1826,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900143215.1",
                "gtdb_species": "s__Geodermatophilus obscurus_A",
                "ani": 84.9032,
                "matched_fragments": 1123,
                "total_fragments": 1826,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900107105.1",
                "gtdb_species": "s__Geodermatophilus africanus",
                "ani": 84.8064,
                "matched_fragments": 1121,
                "total_fragments": 1826,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900188375.1",
                "gtdb_species": "s__Geodermatophilus pulveris",
                "ani": 84.5585,
                "matched_fragments": 1034,
                "total_fragments": 1826,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008124535.1",
                "gtdb_species": "s__Geodermatophilus sp008124535",
                "ani": 84.0905,
                "matched_fragments": 1014,
                "total_fragments": 1826,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003002915.1",
                "gtdb_species": "s__Geodermatophilus tzadiensis",
                "ani": 83.9066,
                "matched_fragments": 1064,
                "total_fragments": 1826,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003182485.1",
                "gtdb_species": "s__Geodermatophilus normandii",
                "ani": 83.4737,
                "matched_fragments": 1044,
                "total_fragments": 1826,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003319185.1",
                "gtdb_species": "s__Blastococcus sp003319185",
                "ani": 83.3526,
                "matched_fragments": 953,
                "total_fragments": 1826,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Blastococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003319125.1",
                "gtdb_species": "s__Geodermatophilus sp003319125",
                "ani": 83.2162,
                "matched_fragments": 989,
                "total_fragments": 1826,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013408985.1",
                "gtdb_species": "s__Geodermatophilus_A daqingensis",
                "ani": 82.6417,
                "matched_fragments": 1057,
                "total_fragments": 1826,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.034,
        "cell_length": 0.07,
        "doubling_h": null,
        "growth_tmp": 28.444,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.062,
        "genome_size": 5519188.0,
        "gc_content": 74.0,
        "coding_genes": 4798.5,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 47.0,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.6,
        "coccus_cell_shape": 0.4,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Geodermatophilus",
        "sabuli"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}