{
    "type": "genome",
    "identifier": "GCF_900215515.1",
    "organism": "Persephonella hydrogeniphila",
    "title": "Persephonella hydrogeniphila",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900215515.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06265182",
        "wgs_master": "OBEI00000000.1",
        "refseq_category": "reference genome",
        "taxid": "198703",
        "species_taxid": "198703",
        "organism_name": "Persephonella hydrogeniphila",
        "infraspecific_name": "strain=DSM 15103",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/09/28",
        "asm_name": "IMG-taxon 2728369220 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900215515.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/215/515/GCF_900215515.1_IMG-taxon_2728369220_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1998302",
        "genome_size_ungapped": "1998302",
        "gc_percent": "35.000000",
        "replicon_count": "0",
        "scaffold_count": "19",
        "contig_count": "19",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900215515.1-RS_2024_05_03",
        "annotation_date": "2024-05-03",
        "total_gene_count": "2136",
        "protein_coding_gene_count": "2081",
        "non_coding_gene_count": "46",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-09-28",
    "dateModified": "2017-09-28",
    "datePublished": "2017-09-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Persephonella hydrogeniphila"
        ],
        "sample_taxid": [
            "198703"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "0.553 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1998302",
        "Number of Sequences": "19",
        "Longest Sequences (bp)": "555986",
        "N50 (bp)": "151898",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "35.1",
        "Number of CDSs": "2083",
        "Average Protein Length": "302.0",
        "Coding Ratio (%)": "94.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "9"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Persephonella hydrogeniphila",
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                "accession": "GCA_900215515.1",
                "taxid": 198703,
                "species_taxid": 198703,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 656,
                "total_fragments": 657,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Persephonella atlantica",
                "strain": "strain=MO1340",
                "accession": "GCA_016617615.1",
                "taxid": 2699429,
                "species_taxid": 2699429,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.013,
                "matched_fragments": 280,
                "total_fragments": 657,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Persephonella marina",
                "strain": "strain=EX-H1",
                "accession": "GCA_000021565.1",
                "taxid": 309805,
                "species_taxid": 309805,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4885,
                "matched_fragments": 207,
                "total_fragments": 657,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sulfurihydrogenibium subterraneum",
                "strain": "strain=DSM 15120",
                "accession": "GCA_000619805.1",
                "taxid": 171121,
                "species_taxid": 171121,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5343,
                "matched_fragments": 53,
                "total_fragments": 657,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sulfurihydrogenibium azorense",
                "strain": "strain=Az-Fu1",
                "accession": "GCA_000021545.1",
                "taxid": 309806,
                "species_taxid": 309806,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4889,
                "matched_fragments": 63,
                "total_fragments": 657,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900215515.1",
                "gtdb_species": "s__Persephonella hydrogeniphila",
                "ani": 100.0,
                "matched_fragments": 656,
                "total_fragments": 657,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Hydrogenothermales;f__Hydrogenothermaceae;g__Persephonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_015487465.1",
                "gtdb_species": "s__Persephonella sp015487465",
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                "matched_fragments": 341,
                "total_fragments": 657,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Hydrogenothermales;f__Hydrogenothermaceae;g__Persephonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.63",
                "min_intra_species_ani": "99.63",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000703045.1",
                "gtdb_species": "s__Persephonella sp000703045",
                "ani": 78.466,
                "matched_fragments": 230,
                "total_fragments": 657,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Hydrogenothermales;f__Hydrogenothermaceae;g__Persephonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000703085.1",
                "gtdb_species": "s__Persephonella sp000703085",
                "ani": 78.347,
                "matched_fragments": 257,
                "total_fragments": 657,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Hydrogenothermales;f__Hydrogenothermaceae;g__Persephonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016617615.1",
                "gtdb_species": "s__Persephonella atlantica",
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                "matched_fragments": 279,
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                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Hydrogenothermales;f__Hydrogenothermaceae;g__Persephonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015519975.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Hydrogenothermales;f__Hydrogenothermaceae;g__Hydrogenothermus",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000021565.1",
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                "mean_intra_species_ani": "100.00",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCA_013153235.1",
                "gtdb_species": "s__Persephonella sp013153235",
                "ani": 77.465,
                "matched_fragments": 150,
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                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Hydrogenothermales;f__Hydrogenothermaceae;g__Persephonella",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_013153295.1",
                "gtdb_species": "s__Persephonella sp013153295",
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                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Hydrogenothermales;f__Hydrogenothermaceae;g__Persephonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": 0.666,
        "growth_tmp": 70.0,
        "optimum_tmp": null,
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        "genome_size": 1998302.0,
        "gc_content": null,
        "coding_genes": null,
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        "gram_stain": 0.0,
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        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
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    },
    "_genome_taxon": [
        "Persephonella",
        "hydrogeniphila"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}