{
    "type": "genome",
    "identifier": "GCF_900217905.1",
    "organism": "Alloalcanivorax xenomutans",
    "title": "Alloalcanivorax xenomutans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900217905.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05877962",
        "wgs_master": "OBMO00000000.1",
        "refseq_category": "na",
        "taxid": "1094342",
        "species_taxid": "1094342",
        "organism_name": "Alloalcanivorax xenomutans",
        "infraspecific_name": "strain=JC109",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/09/28",
        "asm_name": "IMG-taxon 2740891819 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900217905.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/217/905/GCF_900217905.1_IMG-taxon_2740891819_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4350020",
        "genome_size_ungapped": "4349731",
        "gc_percent": "61.500000",
        "replicon_count": "0",
        "scaffold_count": "47",
        "contig_count": "47",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900217905.1-RS_2024_04_27",
        "annotation_date": "2024-04-27",
        "total_gene_count": "3959",
        "protein_coding_gene_count": "3900",
        "non_coding_gene_count": "49",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-09-28",
    "dateModified": "2017-09-28",
    "datePublished": "2017-09-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alloalcanivorax xenomutans"
        ],
        "sample_taxid": [
            "1094342"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.220 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4350020",
        "Number of Sequences": "47",
        "Longest Sequences (bp)": "359252",
        "N50 (bp)": "180371",
        "Gap Ratio (%)": "0.006644",
        "GCcontent (%)": "61.7",
        "Number of CDSs": "3927",
        "Average Protein Length": "330.7",
        "Coding Ratio (%)": "89.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Alcanivorax xenomutans",
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                "accession": "GCA_900217905.1",
                "taxid": 1094342,
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1421,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Alcanivorax balearicus",
                "strain": "strain=MACL04",
                "accession": "GCA_025532145.1",
                "taxid": 413232,
                "species_taxid": 413232,
                "relation_to_type": "type",
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                "matched_fragments": 1285,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "species_taxid": 285091,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcanivorax dieselolei",
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                "relation_to_type": "type",
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                "matched_fragments": 1307,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Alcanivorax profundimaris",
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                "accession": "GCA_015265435.1",
                "taxid": 2735259,
                "species_taxid": 2735259,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 710,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcanivorax marinus",
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                "accession": "GCA_025532125.1",
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                "species_taxid": 1177169,
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                "matched_fragments": 644,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas degradans",
                "strain": "strain=FDAARGOS_876",
                "accession": "GCA_016028635.1",
                "taxid": 2968968,
                "species_taxid": 2968968,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.94,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas degradans",
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                "accession": "GCA_002891015.1",
                "taxid": 2968968,
                "species_taxid": 2968968,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 158,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas degradans",
                "strain": "strain=DSM 50238",
                "accession": "GCA_024448505.1",
                "taxid": 2968968,
                "species_taxid": 2968968,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalkalivibrio thiocyanodenitrificans",
                "strain": "strain=ARhD 1",
                "accession": "GCA_000378965.1",
                "taxid": 243063,
                "species_taxid": 243063,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7201,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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            "contamination": 0.0,
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                "accession": "GCF_900217905.1",
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                "total_fragments": 1423,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.43",
                "min_intra_species_ani": "98.18",
                "mean_intra_species_af": "0.92",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax",
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            {
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                "mean_intra_species_ani": "N/A",
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            },
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        ]
    },
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
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    },
    "_genome_taxon": [
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        "xenomutans"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}