{ "type": "genome", "identifier": "GCF_900218035.1", "organism": "Pseudobutyrivibrio ruminis DSM 9787", "title": "Pseudobutyrivibrio ruminis DSM 9787", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900218035.1", "bioproject": "PRJNA224116", "biosample": "SAMN02910411", "wgs_master": "OBMR00000000.1", "refseq_category": "reference genome", "taxid": "1123011", "species_taxid": "46206", "organism_name": "Pseudobutyrivibrio ruminis DSM 9787", "infraspecific_name": "strain=DSM 9787", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/28", "asm_name": "IMG-taxon 2596583532 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900218035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/218/035/GCF_900218035.1_IMG-taxon_2596583532_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3020378", "genome_size_ungapped": "3020378", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900218035.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "2820", "protein_coding_gene_count": "2729", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-28", "dateModified": "2017-09-28", "datePublished": "2017-09-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudobutyrivibrio ruminis DSM 9787" ], "sample_taxid": [ "1123011" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.851 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3020378", "Number of Sequences": "18", "Longest Sequences (bp)": "406588", "N50 (bp)": "287553", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.8", "Number of CDSs": "2735", "Average Protein Length": "336.2", "Coding Ratio (%)": "91.3", "Number of rRNAs": "0", "Number of tRNAs": "68", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudobutyrivibrio ruminis", "strain": "strain=DSM 9787", "accession": "GCA_900218035.1", "taxid": 46206, 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