{
    "type": "genome",
    "identifier": "GCF_900230205.1",
    "organism": "Alysiella filiformis DSM 16848",
    "title": "Alysiella filiformis DSM 16848",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900230205.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02746062",
        "wgs_master": "OCNF00000000.1",
        "refseq_category": "na",
        "taxid": "1120981",
        "species_taxid": "194196",
        "organism_name": "Alysiella filiformis DSM 16848",
        "infraspecific_name": "strain=DSM 16848",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/09/28",
        "asm_name": "IMG-taxon 2574179727 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900230205.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/230/205/GCF_900230205.1_IMG-taxon_2574179727_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2385602",
        "genome_size_ungapped": "2378755",
        "gc_percent": "46.500000",
        "replicon_count": "0",
        "scaffold_count": "51",
        "contig_count": "51",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900230205.1-RS_2024_08_22",
        "annotation_date": "2024-08-22",
        "total_gene_count": "2420",
        "protein_coding_gene_count": "2304",
        "non_coding_gene_count": "63",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-09-28",
    "dateModified": "2017-09-28",
    "datePublished": "2017-09-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alysiella filiformis DSM 16848"
        ],
        "sample_taxid": [
            "1120981"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Australia"
        ],
        "sample_host_location_id": [],
        "data_size": "0.649 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2385602",
        "Number of Sequences": "51",
        "Longest Sequences (bp)": "214551",
        "N50 (bp)": "102455",
        "Gap Ratio (%)": "0.287014",
        "GCcontent (%)": "46.6",
        "Number of CDSs": "2205",
        "Average Protein Length": "301.0",
        "Coding Ratio (%)": "83.5",
        "Number of rRNAs": "4",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "9"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Alysiella filiformis",
                "strain": "strain=DSM 16848",
                "accession": "GCA_900230205.1",
                "taxid": 194196,
                "species_taxid": 194196,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 767,
                "total_fragments": 771,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Alysiella filiformis",
                "strain": "strain=DSM 16848",
                "accession": "GCA_014054525.1",
                "taxid": 194196,
                "species_taxid": 194196,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9798,
                "matched_fragments": 769,
                "total_fragments": 771,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Alysiella filiformis",
                "strain": "strain=DSM 16848",
                "accession": "GCA_020162295.1",
                "taxid": 194196,
                "species_taxid": 194196,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9777,
                "matched_fragments": 771,
                "total_fragments": 771,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Alysiella crassa",
                "strain": "strain=S6",
                "accession": "GCA_022871045.1",
                "taxid": 153491,
                "species_taxid": 153491,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.5348,
                "matched_fragments": 492,
                "total_fragments": 771,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alysiella crassa",
                "strain": "strain=DSM 2578",
                "accession": "GCA_000745955.1",
                "taxid": 153491,
                "species_taxid": 153491,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.4897,
                "matched_fragments": 466,
                "total_fragments": 771,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alysiella crassa",
                "strain": "strain=NCTC10283",
                "accession": "GCA_900445245.1",
                "taxid": 153491,
                "species_taxid": 153491,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.2681,
                "matched_fragments": 488,
                "total_fragments": 771,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kingella kingae",
                "strain": "strain=4177/66",
                "accession": "GCA_022871005.1",
                "taxid": 504,
                "species_taxid": 504,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2766,
                "matched_fragments": 370,
                "total_fragments": 771,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Simonsiella muelleri",
                "strain": "strain=ATCC 29453",
                "accession": "GCA_000163775.2",
                "taxid": 72,
                "species_taxid": 72,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7592,
                "matched_fragments": 319,
                "total_fragments": 771,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Simonsiella muelleri",
                "strain": "strain=ATCC 29453",
                "accession": "GCA_002951835.1",
                "taxid": 72,
                "species_taxid": 72,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7419,
                "matched_fragments": 321,
                "total_fragments": 771,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vitreoscilla stercoraria",
                "strain": "strain=SAG 1488-6",
                "accession": "GCA_022870945.1",
                "taxid": 61,
                "species_taxid": 61,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3026,
                "matched_fragments": 71,
                "total_fragments": 771,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014054525.1",
                "gtdb_species": "s__Alysiella filiformis",
                "ani": 99.9798,
                "matched_fragments": 769,
                "total_fragments": 771,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Alysiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000745955.1",
                "gtdb_species": "s__Alysiella crassa",
                "ani": 85.4696,
                "matched_fragments": 467,
                "total_fragments": 771,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Alysiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900111845.1",
                "gtdb_species": "s__Kingella kingae",
                "ani": 79.2607,
                "matched_fragments": 359,
                "total_fragments": 771,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.43",
                "min_intra_species_ani": "98.16",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 37,
                "status": "-"
            },
            {
                "accession": "GCF_002951835.1",
                "gtdb_species": "s__Simonsiella muelleri",
                "ani": 78.7311,
                "matched_fragments": 322,
                "total_fragments": 771,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Simonsiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.93",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000751855.1",
                "gtdb_species": "s__Kingella negevensis",
                "ani": 78.6179,
                "matched_fragments": 296,
                "total_fragments": 771,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.09",
                "min_intra_species_ani": "98.48",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_014054725.1",
                "gtdb_species": "s__Conchiformibius steedae",
                "ani": 78.2825,
                "matched_fragments": 279,
                "total_fragments": 771,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Conchiformibius",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
                "min_intra_species_ani": "96.18",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_014054985.1",
                "gtdb_species": "s__Kingella_B oralis",
                "ani": 77.9809,
                "matched_fragments": 284,
                "total_fragments": 771,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.22",
                "min_intra_species_ani": "96.45",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017446355.1",
                "gtdb_species": "s__RGIG3394 sp017446355",
                "ani": 77.1877,
                "matched_fragments": 139,
                "total_fragments": 771,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__RGIG3394",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000813705.1",
                "gtdb_species": "s__Neisseria cerebrosa",
                "ani": 77.0157,
                "matched_fragments": 124,
                "total_fragments": 771,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria",
                "ani_circumscription_radius": 96.5429,
                "mean_intra_species_ani": "97.92",
                "min_intra_species_ani": "97.52",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000745895.1",
                "gtdb_species": "s__Stenoxybacter acetivorans",
                "ani": 76.4764,
                "matched_fragments": 120,
                "total_fragments": 771,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Stenoxybacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.278,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 2385602.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 1.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Alysiella",
        "filiformis",
        "DSM",
        "16848"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}