{ "type": "genome", "identifier": "GCF_900231835.1", "organism": "Monaibacterium marinum", "title": "Monaibacterium marinum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900231835.1", "bioproject": "PRJNA224116", "biosample": "SAMN06273572", "wgs_master": "OCTN00000000.1", "refseq_category": "reference genome", "taxid": "1690039", "species_taxid": "1690039", "organism_name": "Monaibacterium marinum", "infraspecific_name": "strain=C7", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/11", "asm_name": "IMG-taxon 2710264757 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900231835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/231/835/GCF_900231835.1_IMG-taxon_2710264757_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3734267", "genome_size_ungapped": "3734267", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900231835.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3585", "protein_coding_gene_count": "3495", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-11", "dateModified": "2017-10-11", "datePublished": "2017-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Monaibacterium marinum" ], "sample_taxid": [ "1690039" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.051 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3734267", "Number of Sequences": "27", "Longest Sequences (bp)": "1171746", "N50 (bp)": "704375", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.9", "Number of CDSs": "3586", "Average Protein Length": "318.8", "Coding Ratio (%)": "91.8", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pontivivens insulae", "strain": "strain=DSM 103361", "accession": "GCA_003385715.1", "taxid": 1639689, "species_taxid": 1639689, "relation_to_type": "type", "validated": true, "ani": 77.8096, "matched_fragments": 271, "total_fragments": 1231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontivivens insulae", "strain": "strain=CeCT 8812", "accession": "GCA_900302495.1", "taxid": 1639689, "species_taxid": 1639689, "relation_to_type": "type", "validated": true, "ani": 77.7875, "matched_fragments": 273, "total_fragments": 1231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontivivens ytuae", "strain": "strain=MT2928", "accession": "GCA_015679265.1", "taxid": 2789856, "species_taxid": 2789856, "relation_to_type": "type", "validated": true, "ani": 77.2712, "matched_fragments": 286, "total_fragments": 1231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubricella aquisinus", "strain": "strain=DSM 103377", "accession": "GCA_014199445.1", "taxid": 2028108, "species_taxid": 2028108, "relation_to_type": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria intermedia", "strain": "strain=DSM 29341", "accession": "GCA_900129345.1", "taxid": 996115, "species_taxid": 996115, "relation_to_type": "type", "validated": true, "ani": 76.4476, "matched_fragments": 145, "total_fragments": 1231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Loktanella salsilacus", "strain": "strain=DSM 16199", "accession": "GCA_900114485.1", "taxid": 195913, "species_taxid": 195913, "relation_to_type": "type", "validated": true, "ani": 76.4435, "matched_fragments": 140, "total_fragments": 1231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amaricoccus solimangrovi", "strain": "strain=HB172011", "accession": "GCA_006385685.1", "taxid": 2589815, "species_taxid": 2589815, "relation_to_type": "type", "validated": true, "ani": 76.4306, "matched_fragments": 93, "total_fragments": 1231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nioella ostreopsis", "strain": "strain=Z7-4", "accession": "GCA_004000255.1", "taxid": 2448479, "species_taxid": 2448479, "relation_to_type": "type", "validated": true, "ani": 76.4192, "matched_fragments": 156, "total_fragments": 1231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Puniceibacterium antarcticum", "strain": "strain=SM1211", "accession": "GCA_002760615.1", "taxid": 1206336, "species_taxid": 1206336, "relation_to_type": "type", "validated": true, "ani": 76.389, "matched_fragments": 148, "total_fragments": 1231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jannaschia pohangensis", "strain": "strain=DSM 19073", "accession": "GCA_900113875.1", "taxid": 390807, "species_taxid": 390807, "relation_to_type": "type", "validated": true, "ani": 76.3844, "matched_fragments": 128, "total_fragments": 1231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 76.3491, "matched_fragments": 146, "total_fragments": 1231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavimaricola marinus", "strain": "strain=CECT 8899", "accession": "GCA_900184895.1", "taxid": 1819565, "species_taxid": 1819565, "relation_to_type": "type", "validated": true, "ani": 76.3366, "matched_fragments": 113, "total_fragments": 1231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter fulva", "strain": "strain=con5", "accession": "GCA_018798885.1", "taxid": 2840474, "species_taxid": 2840474, "relation_to_type": "type", "validated": true, "ani": 76.3355, "matched_fragments": 144, "total_fragments": 1231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudopuniceibacterium antarcticum", "strain": "strain=HQ09", "accession": "GCA_014899185.1", "taxid": 2613965, "species_taxid": 2613965, "relation_to_type": "type", "validated": true, "ani": 76.3349, "matched_fragments": 138, "total_fragments": 1231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoprimorskyibacter insulae", "strain": "strain=CECT 8871", "accession": "GCA_900302505.1", "taxid": 1695997, "species_taxid": 1695997, "relation_to_type": "type", "validated": true, "ani": 76.3241, "matched_fragments": 125, "total_fragments": 1231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nioella nitratireducens", "strain": "strain=SSW136", "accession": "GCA_001879715.1", "taxid": 1287720, "species_taxid": 1287720, "relation_to_type": "type", "validated": true, "ani": 76.2671, "matched_fragments": 134, "total_fragments": 1231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paroceanicella profunda", "strain": "strain=D4M1", "accession": "GCA_005887635.2", "taxid": 2579971, "species_taxid": 2579971, 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76.1458, "matched_fragments": 104, "total_fragments": 1231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Albimonas donghaensis", "strain": "strain=DSM 17890", "accession": "GCA_900106695.1", "taxid": 356660, "species_taxid": 356660, "relation_to_type": "type", "validated": true, "ani": 76.0887, "matched_fragments": 116, "total_fragments": 1231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanicella actignis", "strain": "strain=DSM 22673", "accession": "GCA_008124525.1", "taxid": 1189325, "species_taxid": 1189325, "relation_to_type": "type", "validated": true, "ani": 76.0443, "matched_fragments": 106, "total_fragments": 1231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus salsus", "strain": "strain=EGI L200073", "accession": "GCA_021556615.1", "taxid": 2911061, "species_taxid": 2911061, "relation_to_type": "type", "validated": true, "ani": 75.9828, "matched_fragments": 92, "total_fragments": 1231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haematobacter massiliensis", "strain": "strain=CCUG 47968", "accession": "GCA_000740795.1", "taxid": 195105, "species_taxid": 195105, "relation_to_type": "type", "validated": true, "ani": 75.8034, "matched_fragments": 93, "total_fragments": 1231, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900231835.1", "gtdb_species": "s__Monaibacterium marinum", "ani": 100.0, "matched_fragments": 1230, "total_fragments": 1231, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Monaibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": 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