{
    "type": "genome",
    "identifier": "GCF_900232865.1",
    "organism": "Corynebacterium dentalis",
    "title": "Corynebacterium dentalis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "URMITE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900232865.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA104348950",
        "wgs_master": "OCTS00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2014528",
        "species_taxid": "2014528",
        "organism_name": "Corynebacterium dentalis",
        "infraspecific_name": "strain=Marseille-P4122",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/10/23",
        "asm_name": "PRJEB21309",
        "asm_submitter": "URMITE",
        "gbrs_paired_asm": "GCA_900232865.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/232/865/GCF_900232865.1_PRJEB21309",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2302937",
        "genome_size_ungapped": "2302937",
        "gc_percent": "60.000000",
        "replicon_count": "0",
        "scaffold_count": "17",
        "contig_count": "17",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900232865.1-RS_2024_08_20",
        "annotation_date": "2024-08-20",
        "total_gene_count": "2113",
        "protein_coding_gene_count": "2036",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-10-23",
    "dateModified": "2017-10-23",
    "datePublished": "2017-10-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Corynebacterium dentalis"
        ],
        "sample_taxid": [
            "2014528"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.653 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2302937",
        "Number of Sequences": "17",
        "Longest Sequences (bp)": "359412",
        "N50 (bp)": "304779",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.9",
        "Number of CDSs": "2114",
        "Average Protein Length": "324.6",
        "Coding Ratio (%)": "89.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Corynebacterium dentalis",
                "strain": "strain=Marseille-P4122",
                "accession": "GCA_900232865.1",
                "taxid": 2014528,
                "species_taxid": 2014528,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 757,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium suicordis",
                "strain": "strain=DSM 45110",
                "accession": "GCA_015351405.1",
                "taxid": 203264,
                "species_taxid": 203264,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9895,
                "matched_fragments": 461,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium urogenitale",
                "strain": "strain=LMM-1652",
                "accession": "GCA_009026825.1",
                "taxid": 2487892,
                "species_taxid": 2487892,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.386,
                "matched_fragments": 283,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium jeikeium",
                "strain": "strain=ATCC 43734",
                "accession": "GCA_000163435.1",
                "taxid": 38289,
                "species_taxid": 38289,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.2675,
                "matched_fragments": 264,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium jeikeium",
                "strain": "strain=NCTC11913",
                "accession": "GCA_900461185.1",
                "taxid": 38289,
                "species_taxid": 38289,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.2414,
                "matched_fragments": 270,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium jeikeium",
                "strain": "strain=ATCC 43734",
                "accession": "GCA_001999385.1",
                "taxid": 38289,
                "species_taxid": 38289,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.2357,
                "matched_fragments": 260,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium falsenii",
                "strain": "strain=FDAARGOS_1494",
                "accession": "GCA_020099275.1",
                "taxid": 108486,
                "species_taxid": 108486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1518,
                "matched_fragments": 268,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium zhongnanshanii",
                "strain": "strain=zg-320",
                "accession": "GCA_014490575.1",
                "taxid": 2768834,
                "species_taxid": 2768834,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6688,
                "matched_fragments": 207,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium resistens",
                "strain": "strain=DSM 45100",
                "accession": "GCA_000177535.2",
                "taxid": 258224,
                "species_taxid": 258224,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4465,
                "matched_fragments": 158,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium appendicis",
                "strain": "strain=DSM 44531",
                "accession": "GCA_900156665.1",
                "taxid": 163202,
                "species_taxid": 163202,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1688,
                "matched_fragments": 119,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium coyleae",
                "strain": "strain=DSM 44184",
                "accession": "GCA_900105505.1",
                "taxid": 53374,
                "species_taxid": 53374,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2607,
                "matched_fragments": 88,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium coyleae",
                "strain": "strain=FDAARGOS 1425",
                "accession": "GCA_019048165.1",
                "taxid": 53374,
                "species_taxid": 53374,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2596,
                "matched_fragments": 88,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia alba",
                "strain": "strain=DSM 44684",
                "accession": "GCA_004339125.1",
                "taxid": 225051,
                "species_taxid": 225051,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.307,
                "matched_fragments": 79,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia alba",
                "strain": "strain=NBRC 108234",
                "accession": "GCA_001612665.1",
                "taxid": 225051,
                "species_taxid": 225051,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2874,
                "matched_fragments": 75,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900232865.1",
                "gtdb_species": "s__Corynebacterium dentalis",
                "ani": 100.0,
                "matched_fragments": 757,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.56",
                "min_intra_species_ani": "98.56",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_015351405.1",
                "gtdb_species": "s__Corynebacterium sp015351405",
                "ani": 80.9986,
                "matched_fragments": 461,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000738175.1",
                "gtdb_species": "s__Corynebacterium jeikeium_C",
                "ani": 79.4832,
                "matched_fragments": 269,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009026825.1",
                "gtdb_species": "s__Corynebacterium sp009026825",
                "ani": 79.386,
                "matched_fragments": 283,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000163435.1",
                "gtdb_species": "s__Corynebacterium jeikeium",
                "ani": 79.2675,
                "matched_fragments": 264,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.68",
                "min_intra_species_ani": "96.00",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_000525655.1",
                "gtdb_species": "s__Corynebacterium falsenii",
                "ani": 79.1168,
                "matched_fragments": 263,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.72",
                "min_intra_species_ani": "98.72",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000738265.1",
                "gtdb_species": "s__Corynebacterium jeikeium_A",
                "ani": 78.9043,
                "matched_fragments": 261,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.92",
                "min_intra_species_ani": "97.52",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_001807485.1",
                "gtdb_species": "s__Corynebacterium sp001807485",
                "ani": 78.8027,
                "matched_fragments": 279,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.83",
                "min_intra_species_ani": "97.75",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001815985.1",
                "gtdb_species": "s__Corynebacterium sp001815985",
                "ani": 78.7818,
                "matched_fragments": 213,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.95",
                "min_intra_species_ani": "96.87",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000177535.2",
                "gtdb_species": "s__Corynebacterium resistens",
                "ani": 78.4465,
                "matched_fragments": 158,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900156665.1",
                "gtdb_species": "s__Corynebacterium appendicis",
                "ani": 78.1688,
                "matched_fragments": 119,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001054945.1",
                "gtdb_species": "s__Corynebacterium falsenii_A",
                "ani": 78.158,
                "matched_fragments": 165,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003955685.1",
                "gtdb_species": "s__Corynebacterium sp003955685",
                "ani": 77.5674,
                "matched_fragments": 139,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019209935.1",
                "gtdb_species": "s__Corynebacterium sp019209935",
                "ani": 77.4134,
                "matched_fragments": 94,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.84",
                "min_intra_species_ani": "95.84",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_012837295.1",
                "gtdb_species": "s__Corynebacterium sp012837295",
                "ani": 77.1035,
                "matched_fragments": 130,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001612665.1",
                "gtdb_species": "s__Nocardia alba",
                "ani": 76.2874,
                "matched_fragments": 75,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.275,
        "cell_length": 0.068,
        "doubling_h": -0.089,
        "growth_tmp": 35.111,
        "optimum_tmp": 35.173,
        "optimum_ph": 7.292,
        "genome_size": 2639223.511,
        "gc_content": 59.791,
        "coding_genes": 2390.094,
        "rRNA16S_genes": 4.282,
        "tRNA_genes": 52.979,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.75,
        "facultative_respiration": 0.231,
        "anaerobic_respiration": 0.063,
        "aerobic_respiration": 0.705,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.985,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.014,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Corynebacterium",
        "dentalis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}