{ "type": "genome", "identifier": "GCF_900232995.1", "organism": "Mycobacterium simulans", "title": "Mycobacterium simulans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900232995.1", "bioproject": "PRJNA224116", "biosample": "SAMEA104335938", "wgs_master": "OCVX00000000.1", "refseq_category": "reference genome", "taxid": "627089", "species_taxid": "627089", "organism_name": "Mycobacterium simulans", "infraspecific_name": "strain=FI-09026", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/25", "asm_name": "PRJEB22891", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_900232995.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/232/995/GCF_900232995.1_PRJEB22891", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6192024", "genome_size_ungapped": "6185194", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "105", "contig_count": "105", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900232995.1-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "5603", "protein_coding_gene_count": "5183", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-25", "dateModified": "2020-09-25", "datePublished": "2020-09-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium simulans" ], "sample_taxid": [ "627089" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.722 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6192024", "Number of Sequences": "105", "Longest Sequences (bp)": "3450000", "N50 (bp)": "3450000", "Gap Ratio (%)": "0.110432", "GCcontent (%)": "64.7", "Number of CDSs": "5360", "Average Protein Length": "333.2", "Coding Ratio (%)": "86.5", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium simulans", "strain": "strain=FI-09026", "accession": "GCA_900232995.1", "taxid": 627089, "species_taxid": 627089, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2014, "total_fragments": 2015, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycobacterium riyadhense", "strain": "strain=DSM 45176", "accession": "GCA_002101845.1", "taxid": 486698, "species_taxid": 486698, "relation_to_type": "type", "validated": true, "ani": 91.6129, "matched_fragments": 1588, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium lacus", "strain": "strain=DSM 44577", "accession": "GCA_002102215.1", "taxid": 169765, "species_taxid": 169765, "relation_to_type": "type", "validated": true, "ani": 82.9058, "matched_fragments": 1210, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium lacus", "strain": "strain=JCM 15657", "accession": "GCA_010731535.1", "taxid": 169765, "species_taxid": 169765, "relation_to_type": "type", "validated": true, "ani": 82.8477, "matched_fragments": 1252, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium angelicum", "strain": "strain=DSM 45057", "accession": "GCA_002086155.1", "taxid": 470074, "species_taxid": 470074, "relation_to_type": "type", "validated": true, "ani": 82.4884, "matched_fragments": 1395, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium szulgai", "strain": "strain=DSM 44166", "accession": "GCA_002116635.1", "taxid": 1787, "species_taxid": 1787, "relation_to_type": "type", "validated": true, "ani": 82.3947, "matched_fragments": 1391, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium shinjukuense", "strain": "strain=CCUG 53584", "accession": "GCA_002086755.1", "taxid": 398694, "species_taxid": 398694, "relation_to_type": "type", "validated": true, "ani": 82.3106, "matched_fragments": 1037, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium shinjukuense", "strain": "strain=JCM 14233", "accession": "GCA_010730055.1", "taxid": 398694, "species_taxid": 398694, "relation_to_type": "type", "validated": true, "ani": 82.2531, "matched_fragments": 1099, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium tuberculosis", "strain": "strain=H37Rv", "accession": "GCA_000195955.2", "taxid": 1773, "species_taxid": 1773, "relation_to_type": "type", "validated": true, "ani": 81.5158, "matched_fragments": 1031, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium gastri", "strain": "strain=DSM 43505", "accession": "GCA_002102175.1", "taxid": 1777, "species_taxid": 1777, "relation_to_type": "type", "validated": true, "ani": 81.3804, "matched_fragments": 1149, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pseudokansasii", "strain": "strain=MK142", "accession": "GCA_900566075.1", "taxid": 2341080, "species_taxid": 2341080, "relation_to_type": "type", "validated": true, "ani": 80.9568, "matched_fragments": 1158, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paraense", "strain": "strain=IEC26", "accession": "GCA_002101815.1", "taxid": 767916, "species_taxid": 767916, "relation_to_type": "type", "validated": true, "ani": 80.9481, "matched_fragments": 1081, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium palustre", "strain": "strain=DSM 44572", "accession": "GCA_002101785.1", "taxid": 153971, "species_taxid": 153971, "relation_to_type": "type", "validated": true, "ani": 80.8322, "matched_fragments": 1026, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium conspicuum", "strain": "strain=JCM 14738", "accession": "GCA_010730195.1", "taxid": 44010, "species_taxid": 44010, "relation_to_type": "type", "validated": true, 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