{ "type": "genome", "identifier": "GCF_900239185.1", "organism": "Tenacibaculum finnmarkense", "title": "Tenacibaculum finnmarkense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "INRA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900239185.1", "bioproject": "PRJNA224116", "biosample": "SAMEA104389408", "wgs_master": "OENA00000000.1", "refseq_category": "na", "taxid": "2781243", "species_taxid": "2781243", "organism_name": "Tenacibaculum finnmarkense", "infraspecific_name": "strain=TNO006", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/12/22", "asm_name": "TNO006_V1", "asm_submitter": "INRA", "gbrs_paired_asm": "GCA_900239185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/239/185/GCF_900239185.1_TNO006_V1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2923287", "genome_size_ungapped": "2923287", "gc_percent": "31.000000", "replicon_count": "0", "scaffold_count": "103", "contig_count": "103", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900239185.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2640", "protein_coding_gene_count": "2555", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-12-22", "dateModified": "2017-12-22", "datePublished": "2017-12-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Tenacibaculum finnmarkense" ], "sample_taxid": [ "2781243" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.802 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2923287", "Number of Sequences": "103", "Longest Sequences (bp)": "355606", "N50 (bp)": "124195", "Gap Ratio (%)": "0.001881", "GCcontent (%)": "30.9", "Number of CDSs": "2541", "Average Protein Length": "330.4", "Coding Ratio (%)": "86.2", "Number of rRNAs": "0", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tenacibaculum finnmarkense", "strain": "strain=TNO006", "accession": "GCA_900239185.1", "taxid": 2781243, "species_taxid": 2781243, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 919, "total_fragments": 924, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Tenacibaculum finnmarkense", "strain": "strain=TNO010", "accession": "GCA_900239495.1", "taxid": 2781243, "species_taxid": 2781243, "relation_to_type": "type", "validated": true, "ani": 96.8149, "matched_fragments": 816, "total_fragments": 924, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Tenacibaculum haliotis", "strain": "strain=KCTC 52419", "accession": "GCA_025215075.1", "taxid": 1888914, "species_taxid": 1888914, "relation_to_type": "type", "validated": true, "ani": 81.7226, "matched_fragments": 556, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum ovolyticum", "strain": "strain=DSM 18103", "accession": "GCA_000430545.1", "taxid": 104270, "species_taxid": 104270, "relation_to_type": "type", "validated": true, "ani": 80.9519, "matched_fragments": 606, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum pelagium", "strain": "strain=S7007", "accession": "GCA_014062345.1", "taxid": 2759527, "species_taxid": 2759527, "relation_to_type": "type", "validated": true, "ani": 79.8167, "matched_fragments": 471, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum discolor", "strain": "strain=DSM 18842", "accession": "GCA_003664185.1", "taxid": 361581, "species_taxid": 361581, "relation_to_type": "type", "validated": true, "ani": 78.8569, "matched_fragments": 406, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum todarodis", "strain": "strain=LPB0136", "accession": "GCA_001889045.1", "taxid": 1850252, "species_taxid": 1850252, "relation_to_type": "type", "validated": true, "ani": 78.5703, "matched_fragments": 352, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum aquimarinum", "strain": "strain=K20-16", "accession": "GCA_022478115.1", "taxid": 2910675, "species_taxid": 2910675, "relation_to_type": "type", "validated": true, "ani": 78.5643, "matched_fragments": 356, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter pectinis", "strain": "strain=L12M9", "accession": "GCA_014352875.1", "taxid": 2738844, "species_taxid": 2738844, "relation_to_type": "type", "validated": true, "ani": 78.1864, "matched_fragments": 334, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter butkevichii", "strain": "strain=KCTC 12100", "accession": "GCA_002954605.1", "taxid": 218490, "species_taxid": 218490, "relation_to_type": "type", "validated": true, "ani": 78.1552, "matched_fragments": 368, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter septentrionalilitoris", "strain": "strain=ANORD1", "accession": "GCA_009832745.1", "taxid": 2494657, "species_taxid": 2494657, "relation_to_type": "type", "validated": true, "ani": 77.7544, "matched_fragments": 256, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter batillariae", "strain": "strain=G4M1", "accession": "GCA_017498485.1", "taxid": 2808900, "species_taxid": 2808900, "relation_to_type": "type", "validated": true, "ani": 77.4558, "matched_fragments": 276, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900239185.1", "gtdb_species": "s__Tenacibaculum finnmarkense_A", "ani": 100.0, "matched_fragments": 919, "total_fragments": 924, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum", "ani_circumscription_radius": 96.8963, "mean_intra_species_ani": "99.00", "min_intra_species_ani": "98.36", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCF_900239495.1", "gtdb_species": "s__Tenacibaculum finnmarkense", "ani": 96.8149, "matched_fragments": 816, "total_fragments": 924, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum", "ani_circumscription_radius": 96.8963, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "98.40", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_900239345.1", "gtdb_species": "s__Tenacibaculum dicentrarchi", "ani": 93.4361, "matched_fragments": 786, "total_fragments": 924, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.61", "min_intra_species_ani": "97.94", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_900239505.1", "gtdb_species": "s__Tenacibaculum piscium", "ani": 87.7855, "matched_fragments": 645, "total_fragments": 924, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.64", "min_intra_species_ani": "99.33", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001693415.1", "gtdb_species": "s__Tenacibaculum soleae", "ani": 81.3157, "matched_fragments": 551, "total_fragments": 924, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002836595.1", "gtdb_species": "s__Tenacibaculum sp002836595", "ani": 81.2084, "matched_fragments": 598, "total_fragments": 924, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000430545.1", "gtdb_species": "s__Tenacibaculum ovolyticum", "ani": 80.9518, "matched_fragments": 606, "total_fragments": 924, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.63", "min_intra_species_ani": "97.63", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.414, "cell_length": 0.577, "doubling_h": null, "growth_tmp": 26.333, "optimum_tmp": 29.316, "optimum_ph": 7.363, "genome_size": 3463422.544, "gc_content": 31.23, "coding_genes": 3101.055, "rRNA16S_genes": 6.5, "tRNA_genes": 63.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.062, "aerobic_respiration": 0.937, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Tenacibaculum", "finnmarkense" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }