{ "type": "genome", "identifier": "GCF_900240335.1", "organism": "Sanguibacter massiliensis", "title": "Sanguibacter massiliensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900240335.1", "bioproject": "PRJNA224116", "biosample": "SAMEA104414126", "wgs_master": "OEQC00000000.1", "refseq_category": "reference genome", "taxid": "1973217", "species_taxid": "1973217", "organism_name": "Sanguibacter massiliensis", "infraspecific_name": "strain=Marseille-P3815", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/01/02", "asm_name": "PRJEB20164", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_900240335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/240/335/GCF_900240335.1_PRJEB20164", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3073441", "genome_size_ungapped": "3073419", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900240335.1-RS_2024_04_08", "annotation_date": "2024-04-08", "total_gene_count": "2855", "protein_coding_gene_count": "2741", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-01-02", "dateModified": "2018-01-02", "datePublished": "2018-01-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Sanguibacter massiliensis" ], "sample_taxid": [ "1973217" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.811 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3073441", "Number of Sequences": "22", "Longest Sequences (bp)": "2990759", "N50 (bp)": "2990759", "Gap Ratio (%)": "0.003286", "GCcontent (%)": "71.6", "Number of CDSs": "2813", "Average Protein Length": "326.1", "Coding Ratio (%)": "89.5", "Number of rRNAs": "10", "Number of tRNAs": "55", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavimobilis marinus", "strain": "strain=DSM 19083", "accession": "GCA_900113055.1", "taxid": 285351, "species_taxid": 285351, "relation_to_type": "type", "validated": true, "ani": 79.939, "matched_fragments": 481, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavimobilis marinus", "strain": "strain=CGMCC 1.3457", "accession": "GCA_014653315.1", "taxid": 285351, "species_taxid": 285351, "relation_to_type": "type", "validated": true, "ani": 79.8587, "matched_fragments": 493, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=NBRC 104118", "accession": "GCA_001570825.1", "taxid": 264251, "species_taxid": 264251, "relation_to_type": "suspected-type", "validated": true, "ani": 79.5497, "matched_fragments": 519, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=JCM 14302", "accession": "GCA_004519295.1", "taxid": 264251, "species_taxid": 264251, "relation_to_type": "suspected-type", "validated": true, "ani": 79.4776, "matched_fragments": 537, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia turbata", "strain": "strain=JCM3160", "accession": "GCA_004121315.1", "taxid": 1713, "species_taxid": 1713, "relation_to_type": "type", "validated": true, "ani": 79.3748, "matched_fragments": 484, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia turbata", "strain": "strain=NRRL B-8019", "accession": "GCA_000718325.1", "taxid": 1713, "species_taxid": 1713, "relation_to_type": "type", "validated": true, "ani": 79.3737, "matched_fragments": 478, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminihabitans luteus", "strain": "strain=DSM 25478", "accession": "GCA_002797595.1", "taxid": 1138585, "species_taxid": 1138585, "relation_to_type": "type", "validated": true, "ani": 79.3668, "matched_fragments": 477, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminihabitans luteus", "strain": "strain=NBRC 108568", "accession": "GCA_016863455.1", "taxid": 1138585, "species_taxid": 1138585, "relation_to_type": "type", "validated": true, "ani": 79.33, "matched_fragments": 480, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia douganii", "strain": "strain=Sa1BUA8", "accession": "GCA_015142735.1", "taxid": 2762210, "species_taxid": 2762210, "relation_to_type": "type", "validated": true, "ani": 79.2943, "matched_fragments": 460, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 79.2443, "matched_fragments": 491, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia rustica", "strain": "strain=Sa4CUA1", "accession": "GCA_014836555.1", "taxid": 2762237, "species_taxid": 2762237, "relation_to_type": "type", "validated": true, "ani": 79.244, "matched_fragments": 490, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia merdavium", "strain": "strain=Sa2CUA9", "accession": "GCA_014836755.1", "taxid": 2762227, "species_taxid": 2762227, "relation_to_type": "type", "validated": true, "ani": 79.1457, "matched_fragments": 467, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas cellasea", "strain": "strain=NBRC 3753", "accession": "GCA_006538745.1", "taxid": 43670, "species_taxid": 43670, "relation_to_type": "type", "validated": true, "ani": 79.0517, "matched_fragments": 522, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fimi", "strain": "strain=ATCC 484", "accession": "GCA_000212695.1", "taxid": 1708, "species_taxid": 1708, "relation_to_type": "type", "validated": true, "ani": 78.9816, "matched_fragments": 510, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas massiliensis", "strain": "strain=JC225", "accession": "GCA_000312005.1", "taxid": 1465811, "species_taxid": 1465811, "relation_to_type": "type", "validated": true, "ani": 78.9498, "matched_fragments": 462, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fimi", "strain": "strain=NCTC7547", "accession": "GCA_900637695.1", "taxid": 1708, "species_taxid": 1708, "relation_to_type": "type", "validated": true, "ani": 78.9098, "matched_fragments": 513, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas persica", "strain": "strain=NBRC 101101", "accession": "GCA_007989825.1", "taxid": 76861, "species_taxid": 76861, "relation_to_type": "type", "validated": true, "ani": 78.8462, "matched_fragments": 493, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas carbonis", "strain": "strain=T26", "accession": "GCA_000767175.1", "taxid": 1386092, "species_taxid": 1386092, "relation_to_type": "type", "validated": true, "ani": 78.8184, "matched_fragments": 452, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas carbonis", "strain": "strain=CGMCC 1.10786", "accession": "GCA_014636275.1", "taxid": 1386092, "species_taxid": 1386092, "relation_to_type": "type", "validated": true, "ani": 78.8125, "matched_fragments": 483, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 78.7869, "matched_fragments": 510, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sanguibacter gelidistatuariae", "strain": "strain=ISLP-3", "accession": "GCA_900096585.1", "taxid": 1814289, "species_taxid": 1814289, "relation_to_type": "type", "validated": true, "ani": 78.7625, "matched_fragments": 407, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas soli", "strain": "strain=DSM 24484", "accession": "GCA_013409305.1", "taxid": 931535, "species_taxid": 931535, "relation_to_type": "type", "validated": true, "ani": 78.677, "matched_fragments": 435, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas timonensis", "strain": "strain=SN7", "accession": "GCA_900046455.1", "taxid": 1689271, "species_taxid": 1689271, "relation_to_type": "type", "validated": true, "ani": 78.5203, "matched_fragments": 407, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fulva", "strain": "strain=DKR-3", "accession": "GCA_018531375.1", "taxid": 2835530, "species_taxid": 2835530, "relation_to_type": "type", "validated": true, "ani": 78.5202, "matched_fragments": 446, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora citrea", "strain": "strain=ATCC 15908", "accession": "GCA_013004695.1", "taxid": 43677, "species_taxid": 43677, "relation_to_type": "type", "validated": true, "ani": 78.2796, "matched_fragments": 415, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas denverensis", "strain": "strain=ATCC BAA-788", "accession": "GCA_012396125.1", "taxid": 264297, "species_taxid": 264297, "relation_to_type": "type", "validated": true, "ani": 77.465, "matched_fragments": 269, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014852685.1", "gtdb_species": "s__Flavimobilis rhizosphaerae", "ani": 95.2033, "matched_fragments": 827, "total_fragments": 1014, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Flavimobilis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.20", "min_intra_species_ani": "95.20", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_011300875.1", "gtdb_species": "s__Flavimobilis sp011300875", "ani": 88.5341, "matched_fragments": 825, "total_fragments": 1014, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Flavimobilis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002564025.1", "gtdb_species": "s__Flavimobilis soli", "ani": 82.0362, "matched_fragments": 603, "total_fragments": 1014, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Flavimobilis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012396185.1", "gtdb_species": "s__Flavimobilis hominis", "ani": 81.5568, "matched_fragments": 596, "total_fragments": 1014, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Flavimobilis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900113055.1", "gtdb_species": "s__Flavimobilis marinus", "ani": 79.8945, "matched_fragments": 485, "total_fragments": 1014, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Flavimobilis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004519295.1", "gtdb_species": "s__Cellulosimicrobium funkei", "ani": 79.5721, "matched_fragments": 527, "total_fragments": 1014, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium", "ani_circumscription_radius": 96.0261, "mean_intra_species_ani": "98.03", "min_intra_species_ani": "96.84", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 18, "status": "-" }, { "accession": "GCF_009708005.2", "gtdb_species": "s__Cellulosimicrobium sp009708005", "ani": 79.3356, "matched_fragments": 532, "total_fragments": 1014, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006538745.1", "gtdb_species": "s__Cellulomonas cellasea", "ani": 79.0189, "matched_fragments": 526, "total_fragments": 1014, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.79", "min_intra_species_ani": "95.59", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014042015.1", "gtdb_species": "s__Actinotalea sp014042015", "ani": 78.9038, "matched_fragments": 443, "total_fragments": 1014, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.62", "min_intra_species_ani": "99.62", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007989825.1", "gtdb_species": "s__Cellulomonas persica", "ani": 78.8716, "matched_fragments": 490, "total_fragments": 1014, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018388445.1", "gtdb_species": "s__Cellulomonas sp018388445", "ani": 78.8014, "matched_fragments": 447, "total_fragments": 1014, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.55", "min_intra_species_ani": "99.30", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_003470205.1", "gtdb_species": "s__Cellulomonas rhizosphaerae", "ani": 78.7743, "matched_fragments": 412, "total_fragments": 1014, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016862755.1", "gtdb_species": "s__Cellulomonas pakistanensis", "ani": 78.7011, "matched_fragments": 427, "total_fragments": 1014, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003696205.1", "gtdb_species": "s__Cellulomonas sp003696205", "ani": 78.6064, "matched_fragments": 406, "total_fragments": 1014, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006715865.1", "gtdb_species": "s__Cellulomonas sp006715865", "ani": 78.5771, "matched_fragments": 456, "total_fragments": 1014, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018388465.1", "gtdb_species": "s__Cellulomonas sp018388465", "ani": 78.2952, "matched_fragments": 403, "total_fragments": 1014, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.65", "min_intra_species_ani": "99.29", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_012396125.1", "gtdb_species": "s__Cellulomonas denverensis", "ani": 77.4742, "matched_fragments": 269, "total_fragments": 1014, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 1.354, "doubling_h": null, "growth_tmp": 28.833, "optimum_tmp": 28.8, "optimum_ph": 6.375, "genome_size": 3409445.233, "gc_content": 71.185, "coding_genes": 3637.667, "rRNA16S_genes": 4.0, "tRNA_genes": 51.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.333, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.666, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.8, "coccus_cell_shape": 0.2, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Sanguibacter", "massiliensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }