{
    "type": "genome",
    "identifier": "GCF_900240385.1",
    "organism": "Clostridium minihomine",
    "title": "Clostridium minihomine",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "URMITE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900240385.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA104414647",
        "wgs_master": "OEQH00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2045012",
        "species_taxid": "2045012",
        "organism_name": "Clostridium minihomine",
        "infraspecific_name": "strain=Marseille-P4642",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/01/02",
        "asm_name": "PRJEB23093",
        "asm_submitter": "URMITE",
        "gbrs_paired_asm": "GCA_900240385.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/240/385/GCF_900240385.1_PRJEB23093",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2705425",
        "genome_size_ungapped": "2705425",
        "gc_percent": "46.000000",
        "replicon_count": "0",
        "scaffold_count": "12",
        "contig_count": "12",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900240385.1-RS_2024_08_20",
        "annotation_date": "2024-08-20",
        "total_gene_count": "2605",
        "protein_coding_gene_count": "2539",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-01-02",
    "dateModified": "2018-01-02",
    "datePublished": "2018-01-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Clostridium minihomine"
        ],
        "sample_taxid": [
            "2045012"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.765 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2705425",
        "Number of Sequences": "12",
        "Longest Sequences (bp)": "783921",
        "N50 (bp)": "641021",
        "Gap Ratio (%)": "0.000111",
        "GCcontent (%)": "46.1",
        "Number of CDSs": "2573",
        "Average Protein Length": "294.1",
        "Coding Ratio (%)": "83.9",
        "Number of rRNAs": "4",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Clostridium minihomine",
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                "relation_to_type": "type",
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                "matched_fragments": 894,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Clostridium jeddahense",
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                "species_taxid": 1414721,
                "relation_to_type": "type",
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                "total_fragments": 895,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium merdae",
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                "accession": "GCA_900176635.1",
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                "species_taxid": 1958780,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_004768785.1",
                "taxid": 642589,
                "species_taxid": 642589,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4493,
                "matched_fragments": 66,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900240385.1",
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                "total_fragments": 895,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Clostridium_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000577335.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Clostridium_E",
                "ani_circumscription_radius": 95.0,
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                "mean_intra_species_af": "0.91",
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                "num_clustered_genomes": 8,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Clostridium_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCA_000383295.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Clostridium_E",
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            },
            {
                "accession": "GCA_012839345.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Caproiciproducens",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Clostridium_E",
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            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
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        ]
    },
    "_bac2feature": {
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        "rRNA16S_genes": 9.374,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "minihomine"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}