{ "type": "genome", "identifier": "GCF_900243045.1", "organism": "Eisenbergiella massiliensis", "title": "Eisenbergiella massiliensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900243045.1", "bioproject": "PRJNA224116", "biosample": "SAMEA104430918", "wgs_master": "OEZA00000000.1", "refseq_category": "na", "taxid": "1720294", "species_taxid": "1720294", "organism_name": "Eisenbergiella massiliensis", "infraspecific_name": "strain=AT11", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/01/02", "asm_name": "PRJEB14662", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_900243045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/243/045/GCF_900243045.1_PRJEB14662", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7114556", "genome_size_ungapped": "7112676", "gc_percent": "48.000000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-28", "total_gene_count": "6240", "protein_coding_gene_count": "6080", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-01-02", "dateModified": "2018-01-02", "datePublished": "2018-01-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Eisenbergiella massiliensis" ], "sample_taxid": [ "1720294" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "2.000 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7114556", "Number of Sequences": "17", "Longest Sequences (bp)": "3307300", "N50 (bp)": "3305415", "Gap Ratio (%)": "0.026481", "GCcontent (%)": "48.0", "Number of CDSs": "6241", "Average Protein Length": "332.0", "Coding Ratio (%)": "87.4", "Number of rRNAs": "4", "Number of tRNAs": "57", "Number of CRISPRs": "8" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Eisenbergiella massiliensis", "strain": "strain=AT11", "accession": "GCA_900243045.1", "taxid": 1720294, "species_taxid": 1720294, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2356, "total_fragments": 2362, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Eisenbergiella porci", "strain": "strain=WCA-389-WT-23B", "accession": "GCA_009696275.1", "taxid": 2652274, "species_taxid": 2652274, "relation_to_type": "type", "validated": true, "ani": 96.5691, "matched_fragments": 1497, "total_fragments": 2362, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Blautia luti", "strain": "strain=DSM 14534", "accession": "GCA_009707925.1", "taxid": 89014, "species_taxid": 89014, "relation_to_type": "suspected-type", "validated": true, "ani": 81.3063, "matched_fragments": 85, "total_fragments": 2362, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eisenbergiella tayi", "strain": "strain=DSM 26961", "accession": "GCA_001881565.1", "taxid": 1432052, "species_taxid": 1432052, "relation_to_type": "type", "validated": true, "ani": 80.4855, "matched_fragments": 1004, "total_fragments": 2362, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia caecimuris", "strain": "strain=DSM 29492", "accession": "GCA_024622975.1", "taxid": 1796615, "species_taxid": 1796615, "relation_to_type": "type", "validated": true, "ani": 80.1212, "matched_fragments": 91, "total_fragments": 2362, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hungatella hathewayi", "strain": "strain=DSM 13479", "accession": "GCA_025149285.1", "taxid": 154046, "species_taxid": 154046, "relation_to_type": "suspected-type", "validated": true, "ani": 80.1098, "matched_fragments": 156, "total_fragments": 2362, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetatifactor muris", "strain": "strain=DSM 23669", "accession": "GCA_024623325.1", "taxid": 879566, "species_taxid": 879566, "relation_to_type": "type", "validated": true, "ani": 79.2724, "matched_fragments": 151, "total_fragments": 2362, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Diplocloster modestus", "strain": "strain=ASD4241", "accession": "GCA_019042245.1", "taxid": 2850322, "species_taxid": 2850322, "relation_to_type": "type", "validated": true, "ani": 78.4762, "matched_fragments": 93, "total_fragments": 2362, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia producta", "strain": "strain=DSM 2950", "accession": "GCA_000439125.1", "taxid": 33035, "species_taxid": 33035, "relation_to_type": "suspected-type", "validated": true, "ani": 78.3564, "matched_fragments": 98, "total_fragments": 2362, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia producta", "strain": "strain=ATCC 27340", "accession": "GCA_000373885.1", "taxid": 33035, "species_taxid": 33035, "relation_to_type": "suspected-type", "validated": true, "ani": 78.3349, "matched_fragments": 98, "total_fragments": 2362, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineothrix alysoides", "strain": "strain=KNHs209", "accession": "GCA_000732725.1", "taxid": 1469948, "species_taxid": 1469948, "relation_to_type": "type", "validated": true, "ani": 77.396, "matched_fragments": 93, "total_fragments": 2362, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia coccoides", "strain": "strain=DSM 935", "accession": "GCA_004340925.1", "taxid": 1532, "species_taxid": 1532, "relation_to_type": "type", "validated": true, "ani": 77.0807, "matched_fragments": 104, "total_fragments": 2362, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruminococcus gauvreauii", "strain": "strain=DSM 19829", "accession": "GCA_025151995.1", "taxid": 438033, "species_taxid": 438033, "relation_to_type": "type", "validated": true, "ani": 77.0089, "matched_fragments": 65, "total_fragments": 2362, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hespellia stercorisuis", "strain": "strain=DSM 15480", "accession": "GCA_900142165.1", "taxid": 180311, "species_taxid": 180311, "relation_to_type": "type", "validated": true, "ani": 76.6954, "matched_fragments": 61, "total_fragments": 2362, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineothrix alysoides", "strain": "strain=DSM 100556", "accession": "GCA_004345255.1", "taxid": 1469948, "species_taxid": 1469948, "relation_to_type": "type", "validated": true, "ani": 76.6863, "matched_fragments": 91, "total_fragments": 2362, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerocolumna xylanovorans", "strain": "strain=DSM 12503", "accession": "GCA_900143645.1", "taxid": 100134, "species_taxid": 100134, "relation_to_type": "type", "validated": true, "ani": 76.5096, "matched_fragments": 50, "total_fragments": 2362, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cuneatibacter caecimuris", "strain": "strain=DSM 29486", "accession": "GCA_004216775.1", "taxid": 1796618, "species_taxid": 1796618, "relation_to_type": "type", "validated": true, "ani": 76.3869, "matched_fragments": 79, "total_fragments": 2362, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009696275.1", "gtdb_species": "s__Eisenbergiella porci", "ani": 96.5691, "matched_fragments": 1497, "total_fragments": 2362, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eisenbergiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.00", "min_intra_species_ani": "96.55", "mean_intra_species_af": "0.75", "min_intra_species_af": "0.70", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCF_003478085.1", "gtdb_species": "s__Eisenbergiella sp003478085", "ani": 80.9404, "matched_fragments": 1021, "total_fragments": 2362, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eisenbergiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_001881565.1", "gtdb_species": "s__Eisenbergiella tayi", "ani": 80.5032, "matched_fragments": 997, "total_fragments": 2362, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eisenbergiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.85", "min_intra_species_ani": "97.22", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.80", "num_clustered_genomes": 21, "status": "-" }, { "accession": "GCA_900548905.1", "gtdb_species": "s__Eisenbergiella sp900548905", "ani": 80.2574, "matched_fragments": 916, "total_fragments": 2362, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eisenbergiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019119595.1", "gtdb_species": "s__Eisenbergiella merdavium", "ani": 78.2474, "matched_fragments": 387, "total_fragments": 2362, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eisenbergiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.10", "min_intra_species_ani": "98.10", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019113175.1", "gtdb_species": "s__Eisenbergiella stercoravium", "ani": 77.9701, "matched_fragments": 371, "total_fragments": 2362, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eisenbergiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.74", "min_intra_species_ani": "96.88", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.75", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_019120525.1", "gtdb_species": "s__Eisenbergiella stercorigallinarum", "ani": 77.3815, "matched_fragments": 221, "total_fragments": 2362, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eisenbergiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_904392525.1", "gtdb_species": "s__Eisenbergiella sp904392525", "ani": 77.2391, "matched_fragments": 286, "total_fragments": 2362, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eisenbergiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002441865.1", "gtdb_species": "s__CAG-194 sp002441865", "ani": 77.0137, "matched_fragments": 53, "total_fragments": 2362, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-194", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.31", "min_intra_species_ani": "99.31", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018385425.1", "gtdb_species": "s__Acetatifactor sp018385425", "ani": 76.7934, "matched_fragments": 77, "total_fragments": 2362, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.11", "min_intra_species_ani": "99.11", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900755865.1", "gtdb_species": "s__Acetatifactor sp900755865", "ani": 76.6828, "matched_fragments": 71, "total_fragments": 2362, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.03", "min_intra_species_ani": "98.03", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002490705.1", "gtdb_species": "s__UBA3282 sp002490705", "ani": 76.2167, "matched_fragments": 97, "total_fragments": 2362, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA3282", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": null, "optimum_ph": null, "genome_size": 7570753.429, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Eisenbergiella", "massiliensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }