{ "type": "genome", "identifier": "GCF_900289115.1", "organism": "Janibacter massiliensis", "title": "Janibacter massiliensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900289115.1", "bioproject": "PRJNA224116", "biosample": "SAMEA104572231", "wgs_master": "OKQN00000000.1", "refseq_category": "reference genome", "taxid": "2058291", "species_taxid": "2058291", "organism_name": "Janibacter massiliensis", "infraspecific_name": "strain=Marseille-P4121", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/02/21", "asm_name": "PRJEB23930", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_900289115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/289/115/GCF_900289115.1_PRJEB23930", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2452619", "genome_size_ungapped": "2452340", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900289115.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2412", "protein_coding_gene_count": "2306", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-02-21", "dateModified": "2018-02-21", "datePublished": "2018-02-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Janibacter massiliensis" ], "sample_taxid": [ "2058291" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], 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95, "status": "conclusive" }, { "organism_name": "Janibacter melonis", "strain": "strain=NBRC107855", "accession": "GCA_020567375.1", "taxid": 262209, "species_taxid": 262209, "relation_to_type": "type", "validated": true, "ani": 80.639, "matched_fragments": 481, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter endophyticus", "strain": "strain=YIM B02568", "accession": "GCA_016888335.1", "taxid": 2806261, "species_taxid": 2806261, "relation_to_type": "type", "validated": true, "ani": 80.5044, "matched_fragments": 463, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter indicus", "strain": "strain=CGMCC 1.12511", "accession": "GCA_900176385.1", "taxid": 857417, "species_taxid": 857417, "relation_to_type": "type", "validated": true, "ani": 80.1717, "matched_fragments": 461, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter anophelis", "strain": "strain=NBRC 107843", "accession": "GCA_001570945.1", "taxid": 319054, "species_taxid": 319054, "relation_to_type": "type", "validated": true, "ani": 80.0541, "matched_fragments": 433, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter hoylei", "strain": "strain=PVAS-1", "accession": "GCA_004025845.1", "taxid": 364298, "species_taxid": 364298, "relation_to_type": "type", "validated": true, "ani": 79.9555, "matched_fragments": 448, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Knoellia remsis", "strain": "strain=ATCC BAA-1496", "accession": "GCA_003002895.1", "taxid": 407159, "species_taxid": 407159, "relation_to_type": "type", "validated": true, "ani": 79.7548, "matched_fragments": 427, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus jejuensis", "strain": "strain=NRRL B-24460", "accession": "GCA_000720925.1", "taxid": 367299, "species_taxid": 367299, "relation_to_type": "type", "validated": true, "ani": 79.7472, "matched_fragments": 457, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Knoellia flava", "strain": "strain=CGMCC 1.10749", "accession": "GCA_014636255.1", "taxid": 913969, "species_taxid": 913969, "relation_to_type": "type", "validated": true, "ani": 79.7416, "matched_fragments": 435, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Knoellia flava", "strain": "strain=TL1", "accession": "GCA_000768675.1", "taxid": 913969, "species_taxid": 913969, "relation_to_type": "type", "validated": true, "ani": 79.7004, "matched_fragments": 424, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus mangrovi", "strain": "strain=KQZ13P-1", "accession": "GCA_018729305.1", "taxid": 2840470, "species_taxid": 2840470, 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"matched_fragments": 354, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus duodecadis", "strain": "strain=DSM 12806", "accession": "GCA_002846495.1", "taxid": 173053, "species_taxid": 173053, "relation_to_type": "type", "validated": true, "ani": 79.0493, "matched_fragments": 392, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dermacoccus nishinomiyaensis", "strain": "strain=FDAARGOS_1119", "accession": "GCA_016766835.1", "taxid": 1274, "species_taxid": 1274, "relation_to_type": "type", "validated": true, "ani": 78.4847, "matched_fragments": 304, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus dermatophilus", "strain": "strain=DSM 25571", "accession": "GCA_022568795.1", "taxid": 1076331, "species_taxid": 1076331, "relation_to_type": "type", "validated": true, "ani": 78.432, "matched_fragments": 330, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus bolidensis", "strain": "strain=DSM 15745", "accession": "GCA_000426385.1", "taxid": 229480, "species_taxid": 229480, "relation_to_type": "type", "validated": true, "ani": 78.3853, "matched_fragments": 345, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia douganii", "strain": "strain=Sa1BUA8", "accession": "GCA_015142735.1", "taxid": 2762210, "species_taxid": 2762210, "relation_to_type": "type", "validated": true, "ani": 76.8592, "matched_fragments": 256, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900289115.1", "gtdb_species": "s__Janibacter_A massiliensis", "ani": 100.0, "matched_fragments": 810, "total_fragments": 810, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Janibacter", "massiliensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }