{
    "type": "genome",
    "identifier": "GCF_900290195.1",
    "organism": "Anaerococcus marasmi",
    "title": "Anaerococcus marasmi",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "URMITE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900290195.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA104588876",
        "wgs_master": "OLMF00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2057797",
        "species_taxid": "2057797",
        "organism_name": "Anaerococcus marasmi",
        "infraspecific_name": "strain=Marseille-P3557",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/03/01",
        "asm_name": "PRJEB23816",
        "asm_submitter": "URMITE",
        "gbrs_paired_asm": "GCA_900290195.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/290/195/GCF_900290195.1_PRJEB23816",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2130060",
        "genome_size_ungapped": "2130060",
        "gc_percent": "35.500000",
        "replicon_count": "0",
        "scaffold_count": "5",
        "contig_count": "5",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900290195.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "2072",
        "protein_coding_gene_count": "1959",
        "non_coding_gene_count": "67",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-03-01",
    "dateModified": "2018-03-01",
    "datePublished": "2018-03-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Anaerococcus marasmi"
        ],
        "sample_taxid": [
            "2057797"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.591 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2130060",
        "Number of Sequences": "5",
        "Longest Sequences (bp)": "1952113",
        "N50 (bp)": "1952113",
        "Gap Ratio (%)": "0.000047",
        "GCcontent (%)": "35.4",
        "Number of CDSs": "2032",
        "Average Protein Length": "305.5",
        "Coding Ratio (%)": "87.4",
        "Number of rRNAs": "10",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Anaerococcus marasmi",
                "strain": "strain=Marseille-P3557",
                "accession": "GCA_900290195.1",
                "taxid": 2057797,
                "species_taxid": 2057797,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 708,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Anaerococcus prevotii",
                "strain": "strain=NCTC11806",
                "accession": "GCA_900445285.1",
                "taxid": 33034,
                "species_taxid": 33034,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.4702,
                "matched_fragments": 541,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerococcus prevotii",
                "strain": "strain=DSM 20548",
                "accession": "GCA_000024105.1",
                "taxid": 33034,
                "species_taxid": 33034,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.3413,
                "matched_fragments": 543,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerococcus vaginimassiliensis",
                "strain": "strain=Marseille-P4512",
                "accession": "GCA_900626155.1",
                "taxid": 2042308,
                "species_taxid": 2042308,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8987,
                "matched_fragments": 322,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerococcus tetradius",
                "strain": "strain=ATCC 35098",
                "accession": "GCA_000159095.1",
                "taxid": 33036,
                "species_taxid": 33036,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5206,
                "matched_fragments": 348,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerococcus degeneri",
                "strain": "strain=FDAARGOS_1538",
                "accession": "GCA_020215685.1",
                "taxid": 361500,
                "species_taxid": 361500,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3208,
                "matched_fragments": 153,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerococcus mediterraneensis",
                "strain": "strain=Marseille-P2765",
                "accession": "GCA_900128415.1",
                "taxid": 1870984,
                "species_taxid": 1870984,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9176,
                "matched_fragments": 156,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900290195.1",
                "gtdb_species": "s__Anaerococcus marasmi",
                "ani": 100.0,
                "matched_fragments": 708,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000024105.1",
                "gtdb_species": "s__Anaerococcus prevotii",
                "ani": 92.34,
                "matched_fragments": 543,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900626155.1",
                "gtdb_species": "s__Anaerococcus vaginimassiliensis",
                "ani": 81.9052,
                "matched_fragments": 323,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.85",
                "min_intra_species_ani": "95.85",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000159095.1",
                "gtdb_species": "s__Anaerococcus tetradius",
                "ani": 81.5166,
                "matched_fragments": 349,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.20",
                "min_intra_species_ani": "98.20",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900128415.1",
                "gtdb_species": "s__Anaerococcus mediterraneensis",
                "ani": 80.9463,
                "matched_fragments": 157,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017874475.1",
                "gtdb_species": "s__Anaerococcus degeneri",
                "ani": 80.8663,
                "matched_fragments": 146,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900258475.1",
                "gtdb_species": "s__Anaerococcus sp900258475",
                "ani": 80.5309,
                "matched_fragments": 196,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.55",
                "min_intra_species_ani": "96.55",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900551095.1",
                "gtdb_species": "s__Anaerococcus sp900551095",
                "ani": 79.8111,
                "matched_fragments": 86,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017874535.1",
                "gtdb_species": "s__Anaerococcus nagyae",
                "ani": 78.6575,
                "matched_fragments": 107,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.14",
                "min_intra_species_ani": "98.91",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.206,
        "cell_length": -0.206,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.0,
        "genome_size": 2033200.888,
        "gc_content": 32.566,
        "coding_genes": 1860.0,
        "rRNA16S_genes": 3.5,
        "tRNA_genes": 45.5,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Anaerococcus",
        "marasmi"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}