{
    "type": "genome",
    "identifier": "GCF_900290205.1",
    "organism": "Anaerolactibacter massiliensis",
    "title": "Anaerolactibacter massiliensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "URMITE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900290205.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA104588893",
        "wgs_master": "OLMH00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2044573",
        "species_taxid": "2044573",
        "organism_name": "Anaerolactibacter massiliensis",
        "infraspecific_name": "strain=Marseille-P4302",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/03/01",
        "asm_name": "PRJEB22816",
        "asm_submitter": "URMITE",
        "gbrs_paired_asm": "GCA_900290205.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/290/205/GCF_900290205.1_PRJEB22816",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3301716",
        "genome_size_ungapped": "3301716",
        "gc_percent": "49.000000",
        "replicon_count": "0",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900290205.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "3160",
        "protein_coding_gene_count": "3084",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-03-01",
    "dateModified": "2018-03-01",
    "datePublished": "2018-03-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Anaerolactibacter massiliensis"
        ],
        "sample_taxid": [
            "2044573"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.925 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3301716",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "2229576",
        "N50 (bp)": "2229576",
        "Gap Ratio (%)": "0.000454",
        "GCcontent (%)": "49.0",
        "Number of CDSs": "3137",
        "Average Protein Length": "315.0",
        "Coding Ratio (%)": "89.8",
        "Number of rRNAs": "6",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Galactobacillus timonensis",
                "strain": "strain=Marseille-P4641",
                "accession": "GCA_900240265.1",
                "taxid": 2041840,
                "species_taxid": 2041840,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1667,
                "matched_fragments": 238,
                "total_fragments": 1099,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactimicrobium massiliense",
                "strain": "strain=Marseille-P4301",
                "accession": "GCA_900343155.1",
                "taxid": 2161814,
                "species_taxid": 2161814,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.628,
                "matched_fragments": 135,
                "total_fragments": 1099,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_009696165.1",
                "gtdb_species": "s__Bulleidia intestinalis",
                "ani": 97.175,
                "matched_fragments": 809,
                "total_fragments": 1099,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Bulleidia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.55",
                "min_intra_species_ani": "97.14",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 19,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900314905.1",
                "gtdb_species": "s__Bulleidia sp900314905",
                "ani": 88.8835,
                "matched_fragments": 622,
                "total_fragments": 1099,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Bulleidia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900770275.1",
                "gtdb_species": "s__Bulleidia sp900770275",
                "ani": 78.2469,
                "matched_fragments": 140,
                "total_fragments": 1099,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Bulleidia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900314345.1",
                "gtdb_species": "s__Bulleidia sp900314345",
                "ani": 78.1272,
                "matched_fragments": 139,
                "total_fragments": 1099,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Bulleidia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017512725.1",
                "gtdb_species": "s__Bulleidia sp017512725",
                "ani": 77.3895,
                "matched_fragments": 107,
                "total_fragments": 1099,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Bulleidia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017433125.1",
                "gtdb_species": "s__Bulleidia sp017433125",
                "ani": 77.3221,
                "matched_fragments": 66,
                "total_fragments": 1099,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Bulleidia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.54",
                "min_intra_species_ani": "98.45",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017469885.1",
                "gtdb_species": "s__Bulleidia sp017469885",
                "ani": 77.2289,
                "matched_fragments": 114,
                "total_fragments": 1099,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Bulleidia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902761625.1",
                "gtdb_species": "s__Bulleidia sp902761625",
                "ani": 77.2143,
                "matched_fragments": 68,
                "total_fragments": 1099,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Bulleidia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902786245.1",
                "gtdb_species": "s__Bulleidia sp902786245",
                "ani": 77.1557,
                "matched_fragments": 106,
                "total_fragments": 1099,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Bulleidia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015058875.1",
                "gtdb_species": "s__Bulleidia sp015058875",
                "ani": 77.1262,
                "matched_fragments": 104,
                "total_fragments": 1099,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Bulleidia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.73",
                "min_intra_species_ani": "97.73",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016280695.1",
                "gtdb_species": "s__Bulleidia sp016280695",
                "ani": 77.0332,
                "matched_fragments": 52,
                "total_fragments": 1099,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Bulleidia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017420585.1",
                "gtdb_species": "s__Bulleidia sp017420585",
                "ani": 77.0159,
                "matched_fragments": 59,
                "total_fragments": 1099,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Bulleidia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.75",
                "min_intra_species_ani": "98.73",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902775735.1",
                "gtdb_species": "s__Bulleidia sp902775735",
                "ani": 76.8165,
                "matched_fragments": 59,
                "total_fragments": 1099,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Bulleidia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.20",
                "min_intra_species_ani": "97.93",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_905235315.1",
                "gtdb_species": "s__Bulleidia sp905235315",
                "ani": 76.743,
                "matched_fragments": 82,
                "total_fragments": 1099,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Bulleidia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Anaerolactibacter",
        "massiliensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}