{ "type": "genome", "identifier": "GCF_900291065.1", "organism": "Pseudomonas shirazica", "title": "Pseudomonas shirazica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UMR5557", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900291065.1", "bioproject": "PRJNA224116", "biosample": "SAMEA104602038", "wgs_master": "OLKI00000000.1", "refseq_category": "na", "taxid": "1940636", "species_taxid": "1940636", "organism_name": "Pseudomonas shirazica", "infraspecific_name": "strain=VM14", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/29", "asm_name": "Pseudomonas sp. VM14", "asm_submitter": "UMR5557", "gbrs_paired_asm": "GCA_900291065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/291/065/GCF_900291065.1_Pseudomonas_sp._VM14", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5577300", "genome_size_ungapped": "5577300", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "285", "contig_count": "285", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900291065.1-RS_2024_08_05", "annotation_date": "2024-08-05", "total_gene_count": "5254", "protein_coding_gene_count": "5045", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-29", "dateModified": "2019-05-29", "datePublished": "2019-05-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas shirazica" ], "sample_taxid": [ "1940636" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.546 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5577300", "Number of Sequences": "285", "Longest Sequences (bp)": "907306", "N50 (bp)": "356302", "Gap Ratio (%)": "0.000753", "GCcontent (%)": "62.8", "Number of CDSs": "4946", "Average Protein Length": "325.1", "Coding Ratio (%)": "86.5", "Number of rRNAs": "3", "Number of tRNAs": "80", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas inefficax", "strain": "strain=JV551A3", "accession": "GCA_900277125.1", "taxid": 2078786, "species_taxid": 2078786, "relation_to_type": "type", "validated": true, "ani": 94.6287, "matched_fragments": 1596, "total_fragments": 1817, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzicola", "strain": "strain=RD9SR1", "accession": "GCA_014269185.2", "taxid": 485876, "species_taxid": 485876, "relation_to_type": "type", "validated": true, "ani": 90.8145, "matched_fragments": 1469, "total_fragments": 1817, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas anuradhapurensis", "strain": "strain=RD8MR3", "accession": "GCA_014269225.2", "taxid": 485870, "species_taxid": 485870, "relation_to_type": "type", "validated": true, "ani": 90.6974, "matched_fragments": 1485, "total_fragments": 1817, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas putida", "strain": "strain=IPO3752", "accession": "GCA_013387005.1", 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88.5421, "matched_fragments": 1381, "total_fragments": 1817, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 88.5341, "matched_fragments": 1326, "total_fragments": 1817, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas capeferrum", "strain": "strain=WCS358", "accession": "GCA_022548835.1", "taxid": 1495066, "species_taxid": 1495066, "relation_to_type": "type", "validated": true, "ani": 88.1072, "matched_fragments": 1313, "total_fragments": 1817, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas capeferrum", "strain": "strain=WCS358", "accession": "GCA_000731675.1", "taxid": 1495066, "species_taxid": 1495066, "relation_to_type": "type", "validated": true, "ani": 88.0411, "matched_fragments": 1442, "total_fragments": 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