{
    "type": "genome",
    "identifier": "GCF_900291475.1",
    "organism": "Acidaminococcus provencensis",
    "title": "Acidaminococcus provencensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "URMITE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900291475.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA104602751",
        "wgs_master": "OLMM00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2058289",
        "species_taxid": "2058289",
        "organism_name": "Acidaminococcus provencensis",
        "infraspecific_name": "strain=Marseille-P4266",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/03/01",
        "asm_name": "PRJEB23928",
        "asm_submitter": "URMITE",
        "gbrs_paired_asm": "GCA_900291475.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/291/475/GCF_900291475.1_PRJEB23928",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2605487",
        "genome_size_ungapped": "2605487",
        "gc_percent": "53.000000",
        "replicon_count": "0",
        "scaffold_count": "23",
        "contig_count": "23",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900291475.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "2379",
        "protein_coding_gene_count": "2299",
        "non_coding_gene_count": "75",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-03-01",
    "dateModified": "2018-03-01",
    "datePublished": "2018-03-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Acidaminococcus provencensis"
        ],
        "sample_taxid": [
            "2058289"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.726 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2605487",
        "Number of Sequences": "23",
        "Longest Sequences (bp)": "1081286",
        "N50 (bp)": "627690",
        "Gap Ratio (%)": "0.002610",
        "GCcontent (%)": "53.2",
        "Number of CDSs": "2329",
        "Average Protein Length": "316.7",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "12",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Acidaminococcus provencensis",
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                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 856,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Acidaminococcus timonensis",
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                "accession": "GCA_900106585.1",
                "taxid": 1871002,
                "species_taxid": 1871002,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidaminococcus fermentans",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_900095825.1",
                "taxid": 1852375,
                "species_taxid": 1852375,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 345,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidaminococcus intestini",
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                "accession": "GCA_000425045.1",
                "taxid": 187327,
                "species_taxid": 187327,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9899,
                "matched_fragments": 130,
                "total_fragments": 856,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Succiniclasticum ruminis",
                "strain": "strain=DSM 9236",
                "accession": "GCA_900112895.1",
                "taxid": 40841,
                "species_taxid": 40841,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.2162,
                "matched_fragments": 50,
                "total_fragments": 856,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_900291475.1",
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                "matched_fragments": 855,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Acidaminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.37",
                "min_intra_species_ani": "99.31",
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            },
            {
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                "gtdb_species": "s__Acidaminococcus sp000437815",
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                "matched_fragments": 375,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Acidaminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.16",
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                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
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                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_900106585.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Acidaminococcus",
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                "mean_intra_species_ani": "97.46",
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                "num_clustered_genomes": 3,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Acidaminococcus",
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            },
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                "mean_intra_species_ani": "N/A",
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            {
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            },
            {
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "provencensis"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}