{ "tc_result": [ { "organism_name": "Mycobacterium basiliense", "strain": "", "accession": "GCA_900292015.1", "taxid": 2094119, "species_taxid": 2094119, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1869, "total_fragments": 1869, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycobacterium pseudoshottsii", "strain": "strain=JCM 15466", "accession": "GCA_001515365.1", "taxid": 265949, "species_taxid": 265949, "relation_to_type": "suspected-type", "validated": true, "ani": 81.2904, "matched_fragments": 1182, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium marinum", "strain": "strain=CCUG20998", "accession": "GCA_003391395.1", "taxid": 1781, "species_taxid": 1781, "relation_to_type": "suspected-type", "validated": true, "ani": 81.2193, "matched_fragments": 1274, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium marinum", "strain": "strain=DSM 44344", "accession": "GCA_003431645.1", "taxid": 1781, "species_taxid": 1781, "relation_to_type": "suspected-type", "validated": true, "ani": 81.2118, "matched_fragments": 1275, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pseudoshottsii", "strain": "strain=JCM 15466", "accession": "GCA_003584745.1", "taxid": 265949, "species_taxid": 265949, "relation_to_type": "suspected-type", "validated": true, "ani": 81.1557, "matched_fragments": 1252, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium gastri", "strain": "strain=DSM 43505", "accession": "GCA_002102175.1", "taxid": 1777, "species_taxid": 1777, "relation_to_type": "type", "validated": true, "ani": 80.9913, "matched_fragments": 1150, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium innocens", "strain": "strain=MK13", "accession": "GCA_900566055.1", "taxid": 2341083, "species_taxid": 2341083, "relation_to_type": "type", "validated": true, "ani": 80.9749, "matched_fragments": 1132, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium kansasii", "strain": "strain=ATCC 12478", "accession": "GCA_000157895.2", "taxid": 1768, "species_taxid": 1768, "relation_to_type": "type", "validated": true, "ani": 80.8599, "matched_fragments": 1186, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pseudokansasii", "strain": "strain=MK142", "accession": "GCA_900566075.1", "taxid": 2341080, "species_taxid": 2341080, "relation_to_type": "type", "validated": true, "ani": 80.8256, "matched_fragments": 1183, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium lacus", "strain": "strain=DSM 44577", "accession": "GCA_002102215.1", "taxid": 169765, "species_taxid": 169765, "relation_to_type": "type", "validated": true, "ani": 80.5093, "matched_fragments": 1016, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium lacus", "strain": "strain=JCM 15657", "accession": "GCA_010731535.1", "taxid": 169765, "species_taxid": 169765, "relation_to_type": "type", "validated": true, "ani": 80.4206, "matched_fragments": 1058, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium tuberculosis", "strain": "strain=H37Rv", "accession": "GCA_000195955.2", "taxid": 1773, "species_taxid": 1773, "relation_to_type": "type", "validated": true, "ani": 80.0883, "matched_fragments": 911, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium tuberculosis variant africanum", "strain": "strain=ATCC 25420", "accession": "GCA_002982335.1", "taxid": 33894, "species_taxid": 1773, "relation_to_type": "type", "validated": true, "ani": 80.0228, "matched_fragments": 889, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paraense", "strain": "strain=IEC26", "accession": "GCA_002101815.1", "taxid": 767916, "species_taxid": 767916, "relation_to_type": "type", "validated": true, "ani": 79.9447, "matched_fragments": 964, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium conspicuum", "strain": "strain=JCM 14738", "accession": "GCA_010730195.1", "taxid": 44010, "species_taxid": 44010, "relation_to_type": "type", "validated": true, "ani": 79.7678, "matched_fragments": 947, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium avium subsp. avium", "strain": "strain=DSM 44156", "accession": "GCA_009741445.1", "taxid": 44454, "species_taxid": 1764, "relation_to_type": "type", "validated": true, "ani": 79.7601, "matched_fragments": 901, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium kubicae", "strain": "strain=JCM 13573", "accession": "GCA_010723135.1", "taxid": 120959, "species_taxid": 120959, "relation_to_type": "type", "validated": true, "ani": 79.7125, "matched_fragments": 844, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium kubicae", "strain": "strain=JCM 13573", "accession": "GCA_015689175.1", "taxid": 120959, "species_taxid": 120959, "relation_to_type": "type", "validated": true, "ani": 79.6927, "matched_fragments": 851, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium kubicae", "strain": "strain=CIP 106428", "accession": "GCA_002101745.1", "taxid": 120959, "species_taxid": 120959, "relation_to_type": "type", "validated": true, "ani": 79.6628, "matched_fragments": 838, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium bohemicum", "strain": "strain=DSM 44277", "accession": "GCA_002102025.1", "taxid": 56425, "species_taxid": 56425, "relation_to_type": "type", "validated": true, "ani": 79.3978, "matched_fragments": 859, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium bohemicum", "strain": "strain=DSM 44277", "accession": "GCA_001053185.1", "taxid": 56425, "species_taxid": 56425, "relation_to_type": "type", "validated": true, "ani": 79.393, "matched_fragments": 821, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900292015.1", "gtdb_species": "s__Mycobacterium basiliense", "ani": 100.0, "matched_fragments": 1869, "total_fragments": 1869, "gtdb_taxonomy": 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"d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.95", "min_intra_species_ani": "98.52", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 5, "status": "-" } ] }