{ "type": "genome", "identifier": "GCF_900292015.1", "organism": "Mycobacterium basiliense", "title": "Mycobacterium basiliense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University Hospital Basel", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900292015.1", "bioproject": "PRJNA224116", "biosample": "SAMEA104628733", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2094119", "species_taxid": "2094119", "organism_name": "Mycobacterium basiliense", "infraspecific_name": "na", "isolate": "901379", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/12", "asm_name": "MB901379", "asm_submitter": "University Hospital Basel", "gbrs_paired_asm": "GCA_900292015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/292/015/GCF_900292015.1_MB901379", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5607630", "genome_size_ungapped": "5607630", "gc_percent": "65.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900292015.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "4815", "protein_coding_gene_count": "4613", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-12", "dateModified": "2018-12-12", "datePublished": "2018-12-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium basiliense" ], "sample_taxid": [ "2094119" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "not provided" ], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "1.535 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5607630", "Number of Sequences": "1", "Longest Sequences (bp)": "5607630", "N50 (bp)": "5607630", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.0", "Number of CDSs": "4811", "Average Protein Length": "348.8", "Coding Ratio (%)": "89.8", "Number of rRNAs": "3", "Number of tRNAs": "57", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium basiliense", "strain": "", "accession": "GCA_900292015.1", "taxid": 2094119, "species_taxid": 2094119, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1869, "total_fragments": 1869, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycobacterium pseudoshottsii", "strain": "strain=JCM 15466", "accession": "GCA_001515365.1", "taxid": 265949, "species_taxid": 265949, "relation_to_type": "suspected-type", "validated": true, "ani": 81.2904, "matched_fragments": 1182, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium marinum", "strain": "strain=CCUG20998", "accession": "GCA_003391395.1", "taxid": 1781, "species_taxid": 1781, "relation_to_type": "suspected-type", "validated": true, "ani": 81.2193, "matched_fragments": 1274, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium marinum", "strain": "strain=DSM 44344", "accession": "GCA_003431645.1", "taxid": 1781, "species_taxid": 1781, "relation_to_type": "suspected-type", "validated": true, "ani": 81.2118, "matched_fragments": 1275, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pseudoshottsii", "strain": "strain=JCM 15466", "accession": "GCA_003584745.1", "taxid": 265949, "species_taxid": 265949, "relation_to_type": "suspected-type", "validated": true, "ani": 81.1557, "matched_fragments": 1252, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium gastri", "strain": "strain=DSM 43505", "accession": "GCA_002102175.1", "taxid": 1777, "species_taxid": 1777, "relation_to_type": "type", "validated": true, "ani": 80.9913, "matched_fragments": 1150, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium innocens", "strain": "strain=MK13", "accession": "GCA_900566055.1", "taxid": 2341083, "species_taxid": 2341083, "relation_to_type": "type", "validated": true, "ani": 80.9749, "matched_fragments": 1132, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium kansasii", "strain": "strain=ATCC 12478", "accession": "GCA_000157895.2", "taxid": 1768, "species_taxid": 1768, "relation_to_type": "type", "validated": true, "ani": 80.8599, "matched_fragments": 1186, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pseudokansasii", "strain": "strain=MK142", "accession": "GCA_900566075.1", "taxid": 2341080, "species_taxid": 2341080, "relation_to_type": "type", "validated": true, "ani": 80.8256, "matched_fragments": 1183, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium lacus", "strain": "strain=DSM 44577", "accession": "GCA_002102215.1", "taxid": 169765, "species_taxid": 169765, "relation_to_type": "type", "validated": true, "ani": 80.5093, "matched_fragments": 1016, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium lacus", "strain": "strain=JCM 15657", "accession": "GCA_010731535.1", "taxid": 169765, "species_taxid": 169765, "relation_to_type": "type", "validated": true, "ani": 80.4206, "matched_fragments": 1058, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium tuberculosis", "strain": "strain=H37Rv", "accession": "GCA_000195955.2", "taxid": 1773, "species_taxid": 1773, "relation_to_type": "type", "validated": true, "ani": 80.0883, "matched_fragments": 911, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium tuberculosis variant africanum", "strain": "strain=ATCC 25420", "accession": "GCA_002982335.1", "taxid": 33894, "species_taxid": 1773, "relation_to_type": "type", "validated": true, "ani": 80.0228, "matched_fragments": 889, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paraense", "strain": "strain=IEC26", "accession": "GCA_002101815.1", "taxid": 767916, "species_taxid": 767916, "relation_to_type": "type", "validated": true, "ani": 79.9447, "matched_fragments": 964, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium conspicuum", "strain": "strain=JCM 14738", "accession": "GCA_010730195.1", "taxid": 44010, "species_taxid": 44010, "relation_to_type": "type", "validated": true, "ani": 79.7678, "matched_fragments": 947, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium avium subsp. avium", "strain": "strain=DSM 44156", "accession": "GCA_009741445.1", "taxid": 44454, "species_taxid": 1764, "relation_to_type": "type", "validated": true, "ani": 79.7601, "matched_fragments": 901, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium kubicae", "strain": "strain=JCM 13573", "accession": "GCA_010723135.1", "taxid": 120959, 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