{ "type": "genome", "identifier": "GCF_900302465.1", "organism": "Ascidiaceihabitans donghaensis", "title": "Ascidiaceihabitans donghaensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UVEG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900302465.1", "bioproject": "PRJNA224116", "biosample": "SAMEA104628687", "wgs_master": "OMOR00000000.1", "refseq_category": "reference genome", "taxid": "1510460", "species_taxid": "1510460", "organism_name": "Ascidiaceihabitans donghaensis", "infraspecific_name": "strain=CECT 8599", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/24", "asm_name": "A.donghaensisCECT8599_Spades_Prokka", "asm_submitter": "UVEG", "gbrs_paired_asm": "GCA_900302465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/302/465/GCF_900302465.1_A.donghaensisCECT8599_Spades_Prokka", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4077640", "genome_size_ungapped": "4077640", "gc_percent": "55.500000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900302465.1-RS_2024_04_08", "annotation_date": "2024-04-08", "total_gene_count": "4012", "protein_coding_gene_count": "3945", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-04-24", "dateModified": "2018-04-24", "datePublished": "2018-04-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Ascidiaceihabitans donghaensis" ], "sample_taxid": [ "1510460" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.151 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4077640", "Number of Sequences": "7", "Longest Sequences (bp)": "3729116", "N50 (bp)": "3729116", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.3", "Number of CDSs": "4009", "Average Protein Length": "309.9", "Coding Ratio (%)": "91.4", "Number of rRNAs": "6", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ascidiaceihabitans donghaensis", "strain": "strain=CECT 8599", "accession": "GCA_900302465.1", "taxid": 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77.5039, "matched_fragments": 293, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=H3", "accession": "GCA_000712315.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 77.4988, "matched_fragments": 292, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter noctilucicola", "strain": "strain=NB-77", "accession": "GCA_000622385.1", "taxid": 1342301, "species_taxid": 1342301, "relation_to_type": "type", "validated": true, "ani": 77.4781, "matched_fragments": 223, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter noctilucae", "strain": "strain=NB-68", "accession": "GCA_000622365.1", "taxid": 1342302, "species_taxid": 1342302, "relation_to_type": "type", "validated": true, "ani": 77.4073, "matched_fragments": 230, 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"status": "below_threshold" }, { "organism_name": "Sulfitobacter marinus", "strain": "strain=DSM 23422", "accession": "GCA_900116285.1", "taxid": 394264, "species_taxid": 394264, "relation_to_type": "type", "validated": true, "ani": 77.0892, "matched_fragments": 232, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius litorisediminis", "strain": "strain=CECT 8287", "accession": "GCA_900172295.1", "taxid": 1312363, "species_taxid": 1312363, "relation_to_type": "type", "validated": true, "ani": 77.0793, "matched_fragments": 139, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera aquimarina", "strain": "strain=DSM 24565", "accession": "GCA_000473165.1", "taxid": 476529, "species_taxid": 476529, "relation_to_type": "type", "validated": true, "ani": 76.9678, "matched_fragments": 163, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zongyanglinia huanghaiensis", "strain": "strain=CY05", "accession": "GCA_009753675.1", "taxid": 2682100, "species_taxid": 2682100, "relation_to_type": "type", "validated": true, "ani": 76.8604, "matched_fragments": 145, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter flagellatus", "strain": "strain=MA21411-1", "accession": "GCA_021228235.1", "taxid": 2899119, "species_taxid": 2899119, "relation_to_type": "type", "validated": true, "ani": 76.7839, "matched_fragments": 170, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zongyanglinia marina", "strain": "strain=DSW4-44", "accession": "GCA_005771405.1", "taxid": 2578117, "species_taxid": 2578117, "relation_to_type": "type", "validated": true, "ani": 76.7561, "matched_fragments": 150, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cochlodiniinecator piscidefendens", "strain": 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